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RegTransBase – a database of regulatory sequences and interactions based on literature: a resource for investigating transcriptional regulation in prokaryotes
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Desert truffle genomes reveal their reproductive modes and new insights into plant–fungal interaction and ectendomycorrhizal lifestyle
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Coupled laboratory and field investigations resolve microbial interactions that underpin persistence in hydraulically fractured shales
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Gallionellaceae in rice root plaque: metabolic roles in iron oxidation, nutrient cycling, and plant interactions.
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Genome-wide fitness profiling reveals molecular mechanisms that bacteria use to interact with Trichoderma atroviride exometabolites
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BiG-SCAPE 2.0 and BiG-SLiCE 2.0: scalable, accurate and interactive sequence clustering of metabolic gene clusters
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Evolution of a Fungal Gene Expression Regulator
… Describing the largest analysis to date of the modified DNA base 5mC variations in fungi. The … date, involving more than 500 species of fungi. The Impact Interactions between plants and fungi run the gamut from … cause poplar leaf rust, are rich in transposons, which may help the pathogens evade a plant’s defenses. Understanding …
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Promoting the Power of Viral Metagenomics
… An article summarizing the field of viral metagenomics, authored by JGI researchers Lee … DNA or RNA contained in a sample that has been collected from any kind of environment you can think of – animal … the recently published article, the authors provide a brief history of the field, describe the most commonly used …
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Notes on the Microbial Diversity of Puerto Nuevo’s Coastline
… UC Merced graduate student Sabah Ul-Hasan and alumnus of the JGI-UC Merced Genomics Internship Program, first … in particular, as a model system for venom-microbe interactions. Cone snail venom has a number of applications, … Ul-Hasan credits her JGI-UC Merced summer internship for helping lay the foundation for her graduate work. “Being a …
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JGI on the 2020 Highly Cited Researchers List
… fields over the last decade, demonstrated by the production of multiple highly-cited papers that rank in the top 1% by … of a team that  developed CheckV , an automated tool to help researchers assess and improve the quality of … relationships, and how the mutualistic associations allow host plants to acquire nutrients. The papers appeared in  …
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Making a Lichen Together
… For the first time, a team analyzes the transcriptomes of a lichen fungus and alga to understand their partnership … investigating a lichen’s genomes and transcriptomes could help inform efforts at bioengineering symbiotic microbial … autonomy; they can be isolated and grown separately from each other. A possible explanation, according to the …
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The JGI Data Portal: Improving User Experience
… from the other JGI Portals, as well. “For thousands of scientists around the world, the JGI Genome Portal is a … of focus and data and computational needs. Over its 23-year history, JGI has produced more than 13 petabytes of data, … you to reach out and share your thoughts — they’ll help us build a solid knowledge base that may inform future …
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