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Overview of the Genomes OnLine Database (GOLD)
TBK Reddy gives an overview of the JGI's Genomes OnLine Database and why curated metadata matters. …
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EcoFAB 2025: Advancing Mechanistic Microbial Science Using Fabricated Ecosystems
… the future of microbiome science. Organizers The EcoFAB 2025 Conference is organized by the EcoFAB Steering Committee, …
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High-Quality Draft Genome Sequence of Thermocrinis jamiesonii GBS1T Isolated from Great Boiling Spring, Nevada
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iPHoP: A Matchmaker for Phages and their Hosts
… led by scientists at the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at … to generate a matrix of data points.  Applied to 216,015 high-quality virus sequences in the IMG/VR database, the … microbiome data. In other environments, such as terrestrial soil, having additional isolates and metagenomic datasets …
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Single-cell genomics reveals features of a Colwellia species that was dominant during the Deepwater Horizon oil spill
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2022 Progress Report
Genomics Building (IGB) seen above is home to the DOE Joint Genome Institute (JGI). Researchers from the DOE Systems … The vision of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user … (Berkeley Lab), is to become the leading integrative genome science user facility enabling researchers to solve …
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Toward More Efficient Artificial Photosynthesis
Program (CSP) of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … (MaxSynBio), the European Research Council grant (ERC 637675 ‘SYBORG’), as well as the US Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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Doubling Down on Known Protein Families
… of scientists at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … ‘Dark Matter’ Microbial communities living everywhere from soils and stomachs to the deep sea are capable of doing a … we’ve already defined.  “A huge percentage — around 30–50% of the protein families that we knew so far — still does …
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The Genome Portal of the Department of Energy Joint Genome Institute
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The Phaeodactylum genome reveals the evolutionary history of diatom genomes
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Microbiome Data Science Team
… 2014), unearthing hundreds of thousands of new viral genomes and their predicted hosts (Nature 2016, Science … Communications 2017, Science 2018, Molecular Cell 2019) and massive reconstruction of genomes from uncultivated … dark matter through global metagenomics. Nature . 622(7983):594-602. Camargo AP. et al. (2023) Identification of mobile …
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JGI@25: Solving the Mystery of the Missing Oil
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of …
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