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Brachypodium distachyon and Setaria viridis: Model Genetic Systems for the Grasses.
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Natural soil microbiome variation affects spring foliar phenology with consequences for plant productivity and climate‐driven range shifts
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
… gas, regulate Earth’s climate. Most methane is produced in environments without oxygen through a process called … study how methanogenesis takes place in the context of the genetic material of many different organisms in an … hot springs, an extreme environment with low genetic diversity that would help narrow down potential sources of …
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Building Wet and Dry Lab Skills
… the second year of Alabama A&M University students coming to the DOE Joint Genome Institute for research and training experience … Brachypodium distachyon plant root exudates on the plant microbiome. This year, however, there was a new aspect to …
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Jane Grimwood Named HudsonAlpha Genomics Chair
… Congratulations to Jane Grimwood, who has been appointed the Loretta Purdy Spencer Chair in Genomics at the … announcing a high-quality reference sequence of the complex switchgrass genome , using samples from common gardens … in wild populations for the first time. A 2020 Nature Genetics paper describing the genomes of the five major …
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Silver age of GOLD introduces new features
… The JGI’s Genomes OnLine Database celebrates 25 years as a vital resource for data contextualization The Science Since its launch 25 years ago, the  Genomes OnLine Database has … a flagship  genomic metadata repository, making curated microbiome metadata that follows community standards freely …
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Genome‐wide association studies and expression‐based quantitative trait loci analyses reveal roles of HCT2 in caffeoylquinic acid biosynthesis and its regulation by defense‐responsive transcription factors in Populus
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Complete Genome of Oil-Rich Alga Reveals Ideal Platform for Bioengineering
… Streamlined genome with precise gene targeting transforms … grow with or without light. The relatively small size of its genome also simplifies metabolic modeling and pathway … manner. Because of the ease with which the alga can be genetically engineered, it has the potential to be imbued …
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Open Frameworks Training the Next Generation of Scientists
… Educational training technologies provide opportunities for students and … biology analysis. KBase also supports  MICROnet (Microbiomes In Computational Research Opportunities … research and skill development while curating reusable microbiome data. Undergraduate educators are partnering with …
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A Genomic Perspective Across Earth’s Microbiomes Reveals That Genome Size in Archaea and Bacteria Is Linked to Ecosystem Type and Trophic Strategy
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Gene and transcript abundances of bacterial type III secretion systems from the rumen microbiome are correlated with methane yield in sheep
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Decomposing a San Francisco estuary microbiome using long-read metagenomics reveals species- and strain-level dominance from picoeukaryotes to viruses
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