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Natural Prodcast Episode 7: Ben Shen
… technology to help access complicated natural product gene clusters, and we’re all really excited about that, and … that we are working on into perspective in the field in general. So what has happened in the past two decades is … total, and different people have different numbers, but in general, an authoritative number for total number of natural …
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
Interns Andrew Lin and mentor Vy Duong, Understanding Key Genes in Photosynthesis Ravikiran Madichetty and mentors TBK … Sandra Hernandez Gonzalez and mentor Hualan Liu, Building Expression Host in Bacilli Class using CRAGE Technology … Pathogens Shayna Bennett and mentor Robert Bowers, Mobile Genetic Elements and CRISPR Spacers in the Conifer Needle …
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Complete genome sequence and the expression pattern of plasmids of the model ethanologen Zymomonas mobilis ZM4 and its xylose-utilizing derivatives 8b and 2032
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Assembly of 500,000 inter-specific catfish expressed sequence tags and large scale gene-associated marker development for whole genome association studies
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Fine-scale evaluation of two standard 16S rRNA gene amplicon primer pairs for analysis of total prokaryotes and archaeal nitrifiers in differently managed soils
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A Synthetic Gene Library Yields a Previously Unknown Glycoside Phosphorylase That Degrades and Assembles Poly-β-1,3-GlcNAc, Completing the Suite of β‑Linked GlcNAc Polysaccharides
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Ian Blaby
… view to developing a deeper understanding of sequence-based gene function. … B.Sc. (HONS) – University of Wales, Cardiff, Genetics Ph.D. – University of Cambridge., Microbial … learning approach to reveal the functional links between gene networks. BMC genomics. 20:12. 2019 Anderson et. al., …
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The genome of Polaromonas naphthalenivorans strain CJ2, isolated from coal tar‐contaminated sediment, reveals physiological and metabolic versatility and evolution through extensive horizontal gene transfer
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Duplications and losses of genes encoding known elements of the stress defence system of the Aspergilli contribute to the evolution of these filamentous fungi but do not directly influence their environmental stress tolerance
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In silico analysis of the expression profile of AA9 Lytic Polysaccharide Monooxygenases (LPMOs) and the CDH Cellobiose Dehydrogenase enzyme in wood-degrader Agaricomycetes. The Pleurotus ostreatus case
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… teems beneath your feet. Both bacteria and fungi have genes that can break down plant fibers. But are they both … sequences (transcriptomes) from their soil samples. This gene expression dataset was particularly important for …
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Whole metagenome sequencing and 16S rRNA gene amplicon analyses reveal the complex microbiome responsible for the success of enhanced in-situ reductive dechlorination (ERD) of a tetrachloroethene-contaminated Superfund site
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