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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… For the first time in several years, the DOE Joint Genome … Emerald Nash and mentor Jonelle Basso, Experimental Study of Root Colonization by Resident Phages of a Plant Growth … the level of photosynthesis in a model green alga called Chlamydomonas reinhardtii. We’re using an attentive …
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A Plantiful Future: Xiaohan Yang
… using gene editing technology to conscientiously mix traits of different plant species will help us get there. …
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Better Living Through Bioenergy
… Biofuels and bioproducts are a way to kick our addiction to … Joint BioEnergy Institute (JBEI) , a JGI partner and one of the four US Department of Energy Bioenergy Research Centers.  …
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Work With the JGI! Tips for a Winning CSP Proposal
… Science Program gives researchers access to all kinds of sequencing, ‘omics and bioinformatics capabilities — and it’s open to scientists at any … and the environment several times a year. A few proposal calls have deadlines coming up – in January, March, and …
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An Integrated Dataset to Understand Ecosystem Interaction
… Research yields a comprehensive tree and soil dataset for understanding the dynamic relationship between poplar … molecular features to large ecosystem-level processes for the first time. By collecting data from 27 different … data set will help identify how different elements of the ecosystem interact and respond to changes in the …
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JGI@25: Using Team Science to Build Communities Around Data
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … a 2012 Community Science Program proposal. Joseph Spatafora of Oregon State University led the effort to sequence 1000 fungal genomes to create two reference … Filling in the Plant Tree of Life …
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Fishing for Novel Cellulose Degraders
… genomic approach to bioprospecting. The Science One of the most vital pieces of equipment for fly fishing is a boxful of lures. Designed with feathers … they uncovered a novel cellulose-degrading bacterium typically found in low abundances. The Impact Microbes are known …
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Fungus Fuels Tree Growth
… start pinning down how a fungal symbiont spurs growth of poplar, a potential biofuel feedstock.     The Science … always found among and within poplar trees, and in an effort to understand its influence on the plant, a team of … from  M. elongata;  the fungus produces them so prolifically, it oozes. The team hypothesizes that lipids could act …
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Environmental Genomics Group
… approaches to identify and characterize genomic information from uncultivated microbes and viruses. We develop computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial lineages, and … interactions, evolution, and adaptation, ultimately informing strategies for environmental monitoring, …
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2025 Progress Report
… demonstrate how their laboratory and data science efforts support users, advance foundational science and enable … to advance biotechnology. Mission  As a U.S. Department of Energy Office of Science user facility supported by the Biological …
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Waiting to Respire
… Genomes from uncultivated bacteria offers clues to ancestral bacteria’s energy sources. More … 2019 in Nature Communications , two research teams joined forces and data sets to describe bacterial genomes for related (“sibling”) lineages Margulisbacteria and … address some of the most pressing challenges of our time. For more information, please visit  …
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From Berkeley to Binghamton: Tracking Strawberry Evolution
… In the summer of 2015, Adam Session was a postdoc working at the DOE Joint … also holds a joint appointment with the University of California, Berkeley. Nowadays, Session is an Assistant … the set of chromosomes from each ancestor is called a subgenome. Session and Rokhsar, building on work …
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