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Insights into convergent evolution of cosexuality in liverworts from the Marchantia quadrata genome
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JGI Announces FY26 Large Scale Portfolio for Our Community Science Program
… Coleman and Hugh Cross; [Below] Zac Freedman, Martin Jonikas, Lotus Lofgren, Fumito Maruyama, Lauren Stadler, … systems to optimize microbial bioreactors. This genomic research creates new opportunities for biomanufacturing, … biomass processing. This year’s portfolio also includes a project led by the National Ecological Observatory Network …
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Dispatches From JGI Interns
… and graduate students to engage in real, impactful research projects with JGI mentors. In this episode, hear … cohort describe their deep dives into genomics, computational tools, and big data.  …
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Simon Roux
… Dr. Roux joined the JGI in 2017 to lead viral genomics research as part of the Metagenome Program. His responsibilities include the development of novel computational … Pascal, France Ph.D. in Bioinformatics, Ecology and Evolutionary Biology, Université Blaise Pascal, France …
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ARBitrator: a software pipeline for on-demand retrieval of auto-curated nifH sequences from GenBank
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The Genome Portal of the Department of Energy Joint Genome Institute
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The Phaeodactylum genome reveals the evolutionary history of diatom genomes
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An Enzyme System to Help Catalyze Bioproduction of Plastic
… By characterizing the structure and function of a methylthio-alkane reductase system, researchers … they worked with the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … way from sequencing to functional characterization, and a project like this — an exciting project — we were able to …
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Metagenomes and Metagenome-Assembled Genomes from Substrate-Amended Hot Spring Sediment Incubations from Yellowstone National Park
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Exploring Polymorphisms Created by Transposable Elements
… My project at the Joint Genome Institute (JGI) was to measure the polymorphisms that transposable elements (TEs) contributed to in the grass model species Brachypodium …
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An Automated Tool for Assessing Virus Data Quality
… CheckV can help researchers assess virus sequence fragments and data … Through advances in sequencing technologies and computational approaches, more and more virus sequences are being … recovered and identified from environmental samples (metagenomes). However, the quality and completeness of …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… Team develops a computational pipeline to sift and characterize RNA virus sequences.  … Information, and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … viruses,” said Simon Roux , a JGI scientist and one of the project co-leads. “But same as DNA viruses, RNA viruses …
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