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High-density CRISPRi screens reveal diverse routes to improved acclimation in cyanobacteria.
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Metabolic capacity is maintained despite shifts in microbial diversity in estuary sediments
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Fungal Friends or Foes in Plant Roots
… They play key roles in maintaining the plant’s health and diversity, which can in turn boost yields for both food and … plants (endophytes). These include genes that degrade plant cell walls and break down plant sugars. The results also … colonize roots by degrading the plant cell wall component pectin. The results therefore predicted that these …
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UC Merced Interns Reflect on Their JGI Summer Projects
… summer. The JGI-UC Merced internship program was founded in 2014 with the goal of inspiring students to embark on a … Check out the short videos highlighting the exciting work done by the 2020 cohort of JGI-UC Merced interns .   by: Ashleigh Papp …
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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… activity in microbiomes. The initial analysis used over 12,000 metagenomes from diverse environments and grouped … data (the 136 tetranucleotide frequencies for each of the 12,063 metagenomes) and reduce it into two axes (LDA … US Department of Energy operated under Contract No. DE-AC02-05CH11231. This research used resources of the National …
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How to Target a Microbial Needle within a Community Haystack
… developed, tested and deployed a pipeline to first target cells from communities of uncultivated microbes, and then … (HCR-FISH). In contrast to standard FISH where a one probe adds one fluorescent molecule when bound to a target, HCR-FISH … User Facility, is supported under Contract No. DE-AC02-05CH11231. This study was funded by the Max Planck Society. …
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Graduate Students Get Thesis Research Opportunity at the JGI
… the opportunity to pursue part of their thesis research at one of the DOE national laboratories or national user … of the latest call , a total of 70 graduate students from 52 universities were selected to carry out part of their … to greenhouse gases,” Kaze said. “It’s an exciting time in the field of genomics and JGI scientists are …
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Pinning Down a Piece of Photosynthesis
… Communications takes on the challenge of understanding one of these proteins — and its role in photosynthesis — in … along these lines came from UC Berkeley professor and longtime JGI collaborator Sabeeha Merchant’s group. In 2011, … structure of the protein related to its function inside the cell, Grosjean used the JGI-developed  guideRNA and Sequence …
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New Insights Into the Influence of Plant and Microbial Diversity on Denitrification Rates in a Salt Marsh
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Metatranscriptomic Sequencing of a Cyanobacterial Soil-Surface Consortium with and without a Diverse Underlying Soil Microbiome
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Functional and genomic diversity of methylotrophic Rhodocyclaceae: description of Methyloversatilis discipulorum sp. nov.
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Diversity and population structure of northern switchgrass as revealed through exome capture sequencing
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