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A Grass Model to Help Improve Giant Miscanthus
… The Science A reference genome sequence and genomic toolkit for the perennial grass Miscanthus sinensis has been … year (perenniality). The Impact Among the long-term aims for bioenergy feedstock crops are increasing their yields … often appear in discussions of rapidly growing plants whose biomass can be renewably converted into energy or biofuels. …
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Nikos Kyrpides
… Program and the development of the comparative analysis platforms for microbial genomes and metagenomes (IMG). He became the … with an emphasis on Microbiome Data Science. His group is developing novel methods for enabling large-scale … 39:499-509. Harrington et al. 2020. A scoutRNA Is Required for Some Type V CRISPR-Cas Systems. Mol Cell . S1097-2765 …
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Massie S. Ballon
… and Outreach Manager at the JGI. Through multi-platform stories and outreach efforts, the team aims to broaden awareness of and access to … translating science, including crafting technical reports, developing educational content, and writing feature … user research, newly accepted proposals, and outreach efforts.  …
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A Pinch of Salt Activates Silent Gene Clusters in Streptomyces
… This single environmental trigger highlights efficiency for users requiring multiple omics methods to examine microbial chemical production. The Science Soil bacteria in the genus … nature's chemical factories. They hold genetic blueprints for dozens of complex compounds, but stay largely dormant …
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Simon Roux
… link viruses to their host(s), collaboration with JGI users for analyzing viral datasets, and the organization of community-building efforts in the field of viral ecogenomics. For this role, Dr. … in collaborative, interdisciplinary research focused around developing foundational knowledge of viral diversity and …
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From Competition to Cooperation
… to carry out a broader analysis than had ever been done before to look at how multiple forest fungi have independently evolved to establish … Summary There are three types of fungal saprotrophs in the forest. White rot can break down the cellulose, … Genomics Initiative (CSP # 305), Metatranscriptomics of Forest Soil Ecosystems project (CSP # 570) and the 1000 …
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Microbiome Data Science Team
… analysis and interpretation is creating new opportunities for breakthrough discoveries and catalyzing a major … The research efforts of the group have concentrated in demonstrating the … with a special focus on microbiome research.  These efforts include exploration of the global diversity of …
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Corymbia Genome Expands Terpene Synthesis Knowledge
… Australia but is increasingly farmed in other countries for essential oil production. The recent assembly of two Corymbia citriodora … the conservation and evolution of the genes responsible for terpene synthase (TPS) enzyme production. This family of … was supported by FAPDF grant “Nextree” 193.000.570/2009. For the portion of the work conducted by the Joint Genome …
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Partnerships: Adopt-A-Genome
… “Adopt a Genome” is an informal program for faculty to “claim” the JGI’s unpublished microbial … genomes that have been sequenced by the JGI though not formally analyzed or published.  The purpose of the program … insights from sequence data, employing IMG data and tools for comparative analysis, visualization and interpretation …
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JGI Announces 2023 Community Science Program Awardees
… to the proposers of the 19 proposals selected for the 2023 Community Science Program call of the U.S. … questions relevant to the DOE mission, and we look forward to facilitating their success. “ The CSP Annual Call … (BER) missions in: sustainable biofuel and bioproducts production, global carbon and nutrient cycling, and …
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Graduate Students Get Thesis Research Opportunity at the JGI
… time in the field of genomics and JGI scientists are developing cutting edge technologies to answer our most pressing problems. I’m very much looking forward to working with JGI and LBNL scientists and have … For her project, “Microbial Community Structure and Methane Production in California’s Canal System,” she will work with …
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JGI Workshop at SIMB NP Meeting
… often tedious and resource intensive. This is often due to, for example, tight regulation of biosynthetic gene clusters … (JGI), a DOE Office of Science User Facility, has been developing and applying new genomics capabilities that address these issues. Check the scientific program for relevant posters. …
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