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How Filamentous Fungi Sense Food
… gene regulatory networks in the model fungus  Neurospora crassa . The Science A team led by researchers at the … pathways used by the filamentous fungus  Neurospora crassa, and to identify and decide on the order in which this … lignin, cellulose and hemicellulose. The Impact N. crassa is the model organism for filamentous fungi, all of …
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JGI@25: From Life at the Extremes to Editing Genomes
… have revisited a number of notable achievements that showcase our collaborations and capabilities to enable great … Is Required for Some Type V CRISPR-Cas Systems Mol Cell. 2020 Aug 6;79(3):416-424.e5. doi: 10.1016/j.molcel.2020.06.022. Wright AV et al. A Functional Mini-Integrase in …
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Sequencing Sphagnum Leads to Discovery of Sex Chromosomes
… Boggy peatlands, which hold much of the Earth’s carbon as well as material that can be converted to energy, are … peatlands store approximately one-third of the world’s soil carbon. The process to harvest energy-generating peat … species, some sphagnum may prefer the dryer, more elevated soil of the hummocks or the more water-logged hollows below. …
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Engagement Webinar: Accessing NEON’s Environmental Sample Archives, Applying JGI & EMSL Omics Tools
… call. Q&A from the Webinar: Q(uestion): Can I apply as a postdoc, or do I need a faculty member as PI? A(nswer: The FICUS program is open to scientists at … Q:  Does NEON have or plan on collecting RNA samples from soil or surfaces for microbe-focused collections? A: Not at …
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VEGA Symposium
… 26 will take place at the UC Berkeley MLK Building, in the East Pauley Ballroom, November 18–19, 2026. The poster … molecular mechanisms of virus-host interactions and phage-based technologies for microbiome manipulation, the VEGA … researchers in the viral ecogenomics field to exchange ideas with experts in the field, as well as with peers from …
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Webinar: SIP technologies at EMSL and JGI
… to a variety of tools that leverage stable isotopes to measure carbon and nutrient flux, and identify microbes … has to go into the plant, out through the roots, into the soil, and then picked up by the rhizosphere, then that takes … experiment, and if so–how do you resolve root respiration/soil respiration vs plant CO2 uptake? A:  We’ve accomplished …
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Nikos Kyrpides
… (IMG). He became the Metagenomics Program head in 2010 and has the combined Microbial Genomes and Metagenomes Program … Kyrpides’ research focus on Microbiome Research with an emphasis on Microbiome Data Science. His group is developing … methods for enabling large-scale comparative analysis, as well as mining and visualization of big data. …
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Trent Northen
… Lab. Since joining Berkeley Lab in 2008, Dr. Northen has had leadership roles within large DOE-funded research programs using mass spectrometry for energy and environmental research, … biomes via the development and application of advanced mass spectrometry approaches and model laboratory ecosystems …
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A Model System for Perennial Grasses
… a genomic model to study drought tolerance in perennial grasses using Panicum hallii (Hall’s panicgrass), by … that allow it to access nutrients easily from a variety of soils and has a high tolerance of extreme water conditions … summer droughts, these plants were better able to uptake soil water compared to the other plants. The team used QTL …
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Enlarging Windows into Understanding Gene Functions
… factors that control how genes are turned on is known as DNA affinity purification sequencing or DAP-seq. The technology was developed by Ronan O’Malley , who leads the Sequencing … proposal through the JGI’s Community Science Program (CSP) focuses on a fungal comparative ENCODE project known as …
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Synthetic Biology Open Language (SBOL) Version 2.2.0
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
… the microbiome of the earth, but most species do not grow easily in the lab. To access the genomes of uncultured  … cells and then amplifying their DNA for genome sequencing was no easy task. The traditional way of collecting them is … together, they found most bacterial genomes from water and soil communities were at least 80% complete when studied …
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