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ALE: a generic assembly likelihood evaluation framework for assessing the accuracy of genome and metagenome assemblies
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Microbial ecology of an Antarctic hypersaline lake: genomic assessment of ecophysiology among dominant haloarchaea
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Olpidium, The Key to the Origin of Terrestrial Fungi
Before 2006, Olpidium was one of the many obscure fungi of … much damage to the hosts, but they are carriers of several viruses (e.g., Lettuce big-vein associated virus LBVaV; … genome and transcriptome data were generated, bioinformatic tools for binning metagenome data involved with mainly …
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Phenotypic and genomic signatures of interspecies cooperation and conflict in naturally occurring isolates of a model plant symbiont
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Uncovering Novel Genomes from Earth’s Microbiomes
… leads to identification of biosynthetic gene clusters for novel secondary metabolites for multiple applications.   … and research scientist in Nikos Kyrpides’  Microbiome Data Science group. “What makes this study really stand out … .) Nayfach also worked with another team on predicting host-virus connections between all viruses in  IMG/VR (Virus) and …
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Environmental Genomics Group
… approaches to identify and characterize genomic information from uncultivated microbes and viruses. We develop computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial lineages, and …
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High quality draft genome sequence and analysis of Pontibacter roseus type strain SRC-1T (DSM 17521T) isolated from muddy waters of a drainage system in Chandigarh, India
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High quality draft genome sequence of the slightly halophilic bacterium Halomonas zhanjiangensis type strain JSM 078169T (DSM 21076T) from a sea urchin in southern China
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Dealing with Drought: Uncovering Sorghum’s Secrets
… by a growing human population and increasing demand for agricultural products.  Sorghum bicolor (L.) Moench is … consortium involving researchers from the University of California (UC), Berkeley, UC Agriculture and Natural Resources … 400 root and leaf samples and helped analyze the sequencing datasets. The results from the first year showed that 10,727 …
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Fine Mapping of the Bsr1 Barley Stripe Mosaic Virus Resistance Gene in the Model Grass Brachypodium distachyon
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Tunturi virus isolates and metagenome-assembled viral genomes provide insights into the virome of Acidobacteriota in Arctic tundra soils
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Consensus statement from the first RdRp Summit: advancing RNA virus discovery at scale across communities
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