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PhycoCosm Tutorial
Learn more about PhycoCosm, the largest interactive collection of sequenced algal genomes, omics … data and comparative analysis tools developed by the Joint Genome Institute (JGI), a US Department of Energy Office of Science user facility at Berkeley Lab. Presented by Igor Grigoriev, Alan Kuo, Sara Calhoun and …
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What Happens Underground Influences Global Nutrient Cycles
DOE user facilities EMSL and JGI announce FY 2020 collaborative FICUS projects. Through the Facilities Integrating Collaborations for User Science (FICUS) program, … 2014 to learn more about the microbial responses and feedbacks to warming through the whole soil profile. The goals …
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Annual Genomics of Energy & Environment Meeting
Thank you for joining us at the 2024 DOE Joint Genome Institute (JGI) Annual … N. Louise Glass, UC Berkeley Ian Foster, Argonne National Laboratory Sue Rhee, Michigan State University   …
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A SNP resource for Douglas-fir: de novotranscriptome assembly and SNP detection and validation
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De novo Nanopore read quality improvement using deep learning
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Hybrid error correction and de novo assembly of single-molecule sequencing reads
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Assemblathon 1: A competitive assessment of de novo short read assembly methods
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Tracking the Origins of Methane-Producing Microbes
Mini-Metagenomics Approach Helps Identify Novel Archaeal … (MAGs) were recovered, most of them archaea. The Quake lab had previously collaborated with the JGI on a proposal … in the physical sciences in the United States, and is working to address some of the most pressing challenges of …
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From Sample Shipments to Sequences – A Tour of the JGI’s Sequencing Pipeline
… the world. Most of those researchers send their samples in from afar, without ever hearing much about the sequencing lab. So today, Chris Daum walks through the JGI’s sequencing …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
…   Visualizing a novel, candidate viral genome found in the deep subsurface ecosystem. The Science Altiarchaea … of microbial communities (metagenomics) and a chemical labelling approach. The Impact Altiarchaea are abundant and …
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Decoding Yellowstone’s Microbial Mats
… it wouldn’t exist without cyanobacteria; they began oxygenating Earth over two billion years ago. A team of researchers … Yellowstone National Park to study how cyanobacteria are living, communally, in microbial mats. Along the way, they’ve encountered …
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JGIota: The Algae Nicknamed ‘Chlamy’
This shorter episode is about a tiny, single-celled alga – Chlamydomonas reinhardtii – that’s … Genomics & Systems Biology Division of the Berkeley Lab Biosciences Area.] …
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