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Division of the large and multifunctional glycoside hydrolase family 2: high functional specificity and biochemical assays in the uncharacterized subfamilies
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An RNA ligase partner for the prokaryotic protein-only RNase P: insights into the functional diversity of RNase P from genome mining
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… in various shades of white. To researchers searching for sequences of RNA viruses in large data sets, their work … that the plethora of RNA virus sequences uncovered “significantly changes the global view of virus diversity,” though … reconcile the findings, coming up with a single, non-redundant dataset,” said Koonin. “Hopefully, relatively soon we …
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FICUS-NERSC/KBASE
… pioneering functional genomics to solve the most relevant bioenergy and environmental problems.  The mission of … discovery at the DOE Office of Science through high performance computing (HPC) and data analysis.  The DOE Systems … collaborations, the DOE JGI, NERSC and KBase issued a call for proposals in biological data science as part of the …
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An Addiction Crucial to a Fungus’ Reproduction
… a likely key to this evolutionary transition. Using this model, researchers also generated the first transcriptomic … in early fungi and discovered genes that are critical for this process. The Impact In the absence of the … endobacteria, the Rhizopus fungus cannot act as a plant pathogen, it cannot reproduce asexually, and researchers …
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JGI Earth Month: The Unusual Metabolism That Helps Plants Withstand Drought
… genomic science research that feels especially relevant to living on a changing planet. Transcript for Audio   ALISON:  Hey! I’m Alison Takemura at the US … genomic science research that feels especially relevant to living on a changing planet. In this short audio …
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An Enzyme System to Help Catalyze Bioproduction of Plastic
… reductase system, researchers could open avenues for using bacteria to produce ethylene and more.  Microbes excel at recycling the abundant miscellanea of their surroundings. Case in point: for … help advance DOE interests in the biotechnology innovation ecosystem. “At JGI, we’ve done the synthesis, metagenome …
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Simon Roux
… link viruses to their host(s), collaboration with JGI users for analyzing viral datasets, and the organization of community-building efforts in the field of viral ecogenomics. For this role, Dr. Roux can rely on more than 10 years of … Université Blaise Pascal, France M.S. in Data Analysis and Modeling for Life Sciences, Université Blaise Pascal, France …
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Making a Lichen Together
… For the first time, a team analyzes the transcriptomes of a … being that is actually comprised of two (or more) participants. One is a fungus (usually belonging to the ascomycetes, … to better understand lichen. The Impact Lichens are a model for inter-kingdom communication and cooperation. Their …
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Identification of novel biomass‐degrading enzymes from genomic dark matter: Populating genomic sequence space with functional annotation
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Novel function of the human presqualene diphosphate phosphatase as a type II phosphatidate phosphatase in phosphatidylcholine and triacylglyceride biosynthesis pathways
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Microbial communities and biogeochemical functioning across peatlands in the Athabasca Oil Sands region of Canada: Implications for reclamation and management
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