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Making a Lichen Together
… time, a team analyzes the transcriptomes of a lichen fungus and alga to understand their partnership more clearly. … comprised of two (or more) participants. One is a fungus (usually belonging to the ascomycetes, one of the two main …
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… first time, a team has comprehensively described host-virus dynamics in a microbial mat. The Science In microbial mats, communities of microorganisms live among viruses that infect them. But what trends govern those virus-host interactions? Do generalist viruses run rampant, …
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JGIota: Looking Back at How Cow Rumen Samples Landed on a Syllabus
… a paper in the journal Science . It detailed how they’d used metagenomics to identify over 27,000 microbial genes. The data from that study is now used across California State University campuses for biotechnology education as part of a course-based …
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JGI@25: Stories from Intern Alumni
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NeLLi — Symposium on New Lineages of Life
… to function’ umbrella, this symposium will further focus on computational approaches to characterize novel … and biomedicine, as well as biotechnology. NeLLi August 24 – 25, 2023 Session Speakers:   Laura Hug , University … Program Tanja Woyke, Microbial Program Robert Bowers,  User Project Coordination Rekha Seshadri,  Functional …
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Crops as Tough as World Cup Turf
… from grasses into other crops.  One grass they studied just happened to be the same species that covered World Cup …
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The Power of One, Amplified
… genomics can add significant value to the other commonly used culture-independent sequencing approaches including … the planet’s nutrient cycles and are potentially of use in fields ranging from agriculture to biotechnology and … tools have helped decode the genomes of tens of thousands of previously unknown and uncultivated microbes …
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Ian Blaby
… the Joint Genome Institute, where he leads three groups focused on HTP DNA design and assembly, strain engineering and … a group lead at Brookhaven National Laboratory where he focused on functional genomics of phototrophs. Through this and … systems. PloS one. 15: 11. 2020 Blaby & Cheng, Building a custom high-throughput platform at the Joint Genome Institute …
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Triggering Morel Fruiting
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility,  reported on just how morel fruiting is triggered when nutrients are …
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JGI Welcomes New UEC Members
The JGI User Executive Committee (UEC) represents the JGI user community and is responsible for providing input and advice on JGI policies and practices that affect users and their access to technical capabilities JGI offers, …
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The Expanding Universe of Methane Metabolisms in Archaea
… insights into an ancient metabolism. Methane is a greenhouse gas 20 times more potent than carbon dioxide. Billions … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, for publicly available metagenome data … and short-chain alkane-oxidizing archaea. They used IMG because the database already contains metagenome …
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JGI@25: Roots of a Mutualist Relationship
In March 2008, the genome sequence of the forest fungus Laccaria bicolor was published in the journal Nature . The mushroom has a symbiotic relationship with the poplar, a JGI … Having this first genome sequence of a mycorrhizal fungus shifted the focus from looking at single organisms to …
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