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A Complex Confection Decoded: Sugarcane Reference Genome
… the location of genes that provide resistance to the brown rust disease that can devastate a crop. The Impact In … foundational genetic information that crop breeders can use to improve sugarcane varieties and advance a sustainable … for the sugarcane cultivar R570 has been generated and  reported in the journal  Nature . The work led by …
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JGIota: Looking Back at How Cow Rumen Samples Landed on a Syllabus
… a paper in the journal Science . It detailed how they’d used metagenomics to identify over 27,000 microbial genes. The data from that study is now used across California State University campuses for biotechnology education as part of a course-based …
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Crops as Tough as World Cup Turf
… from grasses into other crops.  One grass they studied just happened to be the same species that covered World Cup …
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The Power of One, Amplified
… genomics can add significant value to the other commonly used culture-independent sequencing approaches including … the planet’s nutrient cycles and are potentially of use in fields ranging from agriculture to biotechnology and … tools have helped decode the genomes of tens of thousands of previously unknown and uncultivated microbes …
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Ian Blaby
… the Joint Genome Institute, where he leads three groups focused on HTP DNA design and assembly, strain engineering and … a group lead at Brookhaven National Laboratory where he focused on functional genomics of phototrophs. Through this and … systems. PloS one. 15: 11. 2020 Blaby & Cheng, Building a custom high-throughput platform at the Joint Genome Institute …
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JGI@25: Roots of a Mutualist Relationship
In March 2008, the genome sequence of the forest fungus Laccaria bicolor was published in the journal Nature . The mushroom has a symbiotic relationship with the poplar, a JGI … Having this first genome sequence of a mycorrhizal fungus shifted the focus from looking at single organisms to …
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JGI User Executive Committee Expands
Six new members have been elected to the User Executive Committee (UEC) of the U.S. Department of … Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … areas of study span the research interests of the JGI’s user community.  Go here to view the current UEC roster. …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
… will help solve energy and environmental challenges. Viruses are everywhere — in soil, the sea and, of course, the … microbes like bacteria, algae and protists, all kinds of viruses impact many ecological processes, including carbon … including 3,908 isolate reference DNA viruses and 264,413 computationally identified viral contigs. Since then, IMG/VR …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… is central to our ability to offer host-engineering for our users,” says JGI Director Nigel Mouncey. Using CRAGE, JGI has established a portfolio of microbial … individual genes, whole pathways, genome-editing tools, and reporters.” JGI-developed genetic engineering technique …
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JGI@25: Studying Sorghum’s Survival Skills
… sorghum’s survival secrets could change not only how we use and grow sorghum, but other important crops as well. In … of sorghum projects at the JGI: 2009: JGI and collaborators use whole-genome shotgun sequencing to analyze the … than found in the single reference genome, including traits useful for adapting to harsh conditions. 2019: JGI and …
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JGI Earth Month: Wetlands Work in #TenHundredWords
… of California (UC), Merced graduate student working with  Susannah Tringe , JGI’s User Programs deputy and head of the Microbial Systems group … The JGI provides integrated high-throughput sequencing and computational analysis that enable systems-based scientific …
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Panel Discussion: Launching & Sustaining Startups in Synthetic Biology
Program presents… Eyes on the Prize – Launching & Sustaining Startups in Synthetic Biology Who’s Invited? All Berkeley Lab Employees and Affiliates. When: August 29th, 3:00 pm – 5:30 pm 3:00 pm – 4:15 pm: Panel … The JGI provides integrated high-throughput sequencing and computational analysis that enable systems-based scientific …
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