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Accelerating Metagenomics Discoveries with Deep Learning
… of machine learning, data is passed through algorithms organized into multiple interconnected layers. The … workshop, Volkan Sevim, a computational biologist at the US Department of Energy (DOE) Joint Genome Institute (JGI), … similarities in proteins that low sequence identity may belie. The technology he’s using is magical; transform …
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Mapping the microbiome milieu
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Calculating the Costs of Multiple Switchgrass Gene Copies
… team led by researchers at the University of Texas (UT) at Austin, the HudsonAlpha Institute for Biotechnology … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, has discovered that the candidate bioenergy … to address long-standing evolutionary ecological hypotheses about how C4 perennial grasses like switchgrass respond to …
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JGI@25: Studying Sorghum’s Survival Skills
… that will help solve energy and environmental challenges. Sorghum stands out as a candidate feedstock for biofuels … sorghum’s survival secrets could change not only how we use and grow sorghum, but other important crops as well. In … of sorghum projects at the JGI: 2009: JGI and collaborators use whole-genome shotgun sequencing to analyze the …
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Sequencing Sphagnum Leads to Discovery of Sex Chromosomes
… boggy wetlands produces an estimated 5% of annual greenhouse gas emissions. Understanding how sphagnum, a primary … their role as carbon sources. Summary Sphagnum, a genus of just under 400 mosses that can carry up to 25 times … on a smaller scale. Depending on the species, some sphagnum may prefer the dryer, more elevated soil of the hummocks or …
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JGIota: A Surprise for Chloroflexota — The First Flagella!
… To understand how organisms adapt to extreme environments, Marike Palmer and Brian Hedlund study organisms living in hot springs. Hear how their recent work revealed more about the history of the Chloroflexota phylum and a new way …
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The JGI Data Portal: Improving User Experience
… between the JGI and the information technology company Truss has resulted in the JGI Data Portal , a pilot download … scientists to search for specific types of data across organisms, enabling them to conduct more complex types of … — they’ll help us build a solid knowledge base that may inform future updates to one (or more) of the JGI …
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Complete Genome Sequence for Asinibacterium sp. Strain OR53 and Draft Genome Sequence for Asinibacterium sp. Strain OR43, Two Bacteria Tolerant to Uranium
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From Textbook to Real World Applications
… When local students Maya Hanck of Carondelet High School and Tim Kostolansky of … La Salle High School expressed an interest in learning more about the principles of synthetic biology, Robert Evans and …
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Nikos Kyrpides
… at Argonne National Laboratory. Dr. Kyrpides’ research focus on Microbiome Research with an emphasis on Microbiome … S, et al. (2021) Metagenomic compendium of 189,680 DNA viruses from the human gut microbiome. Nat Microbiol . … Mol Cell . S1097-2765 Schulz F, et al. 2020. Giant virus diversity and host interactions through global …
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Metabotyping as a Stopover in Genome-to-Phenome Mapping
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Busting the Unbreakable Lignin
… The Impact Traditional methods for breaking down biomass use aerobic methods (those using oxygen) to remove lignin … biomass production and bioproduct engineering. Summary That organisms make use of cellulose and hemicellulose is … perhaps the accepted narrative wasn’t quite accurate, and maybe anaerobic fungi living in soils or the guts of …
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