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Viruses Reprogram Cells into Different Virocells
… metabolic reprogramming. The Science If it looks like a duck and quacks like a duck, so the adage goes, it must be a … U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … project. For this project, RNA sequencing was done by the JGI, and proteomics and metabolomics analysis and microscopy …
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Experimental Evolution of Extreme Resistance to Ionizing Radiation in Escherichia coli after 50 Cycles of Selection.
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Accelerating Metagenomics Discoveries with Deep Learning
National Laboratory (Berkeley Lab) and other institutions shared their works-in-progress with 86 participants in an … the US Department of Energy (DOE) Joint Genome Institute (JGI), presented on generating vector representations of proteins in order to conduct more efficient protein sequence alignments. He also aims …
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Help from Citrus’ Bitter, Hardier Cousin
… the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … UF/IFAS professor of citrus breeding genetics and longtime JGI collaborator, are senior authors of the  recent study … yet sweet are its genetic secrets. This work builds upon JGI-supported research led by Gmitter and JGI’s Daniel …
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Doubling Down on Known Protein Families
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … families known up until now, and identified many novel structure predictions,” said lead author on the paper Georgios … by environment and found only 7% of protein families were shared across all eight environmental categories. Instead, …
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A Plant Root Atlas for Tracking Developmental Trajectories
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … on single-cell and spatial transcriptomics technologies. JGI Science Programs Deputy Axel Visel provided a broader … perspective:  “ This exciting work is well aligned with the JGI’s growing efforts in establishing plant and fungal …
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Virus-Microbe Interactions of Mud Island Mangroves
… will defend his dissertation. Some of his research was conducted at the JGI through the DOE Office of Science Graduate Student … or national user facilities. Baker had worked with the JGI through a Community Science Program (CSP) proposal, and …
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At the Forefront of Terrestrial Virus Research
… co-advised by Drs. Virginia Rich and Matthew Sullivan. He shared a few thoughts on his summer at JGI through a program that provides graduate thesis research …
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Computationally Classifying Fungal Lifestyles
… major food crops and feedstocks for biomass and biofuel production. Learning about the ecology and evolution of  … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … in Mycology . This work was enabled in part through  JGI’s  Community Science Program (CSP) , as several approved …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… up the toxic chemicals is commonly known as Enhanced Reductive Dechlorination (ERD.) It is dependent on the presence … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … involved in successfully biodegrading PCE.  Through the JGI’s  Community Science Program , they were able to analyze …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
The battle waged below the Earth’s surface is reconstructed by combining a study of microbial communities … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … 150 archaeal viruses had been previously identified. The JGI researchers surveyed publicly available data in the …
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Katherine Louie
Dr. Louie joined the JGI in 2014 to develop the metabolomics program, and in 2019 … became Platform Lead where she manages metabolomics production for community sequencing projects and heads R&D … reservoir of natural products. Proc Natl Acad Sci U S A. 2021;118. doi:10.1073/pnas.2019855118 2. Murphy KM, Edwards …
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