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… culture-disconnected. Like we’ll take some soil samples and sequence all the bugs out of that or whatever. And so I was … methicillin-resistant Staphylococcus aureus . Can you share why finding treatments for these microbes is so important? … in the library now. It’s unique in that it is highly targeted towards, again, plants that are used in traditional …

… at genomes and seeing where the really hard things to sequence were, and wondering what those … what those were … functional was these secondary metabolite pathways. So why was that? What is it about secondary metabolite pathways … that can’t live without their host. They have no extra genes hanging around, they still dedicate 20-30% of their …

… by the Biological and Environmental Research program, the Joint Genome Institute provides advanced genomic capabilities, … in doing so enabled the JGI to be the first to publish the sequence analysis of the target chromosomes 5, 16, and 19, … are at the core of many environmental processes, and the genetic makeup of microbial species and communities forms …

The mission of the Joint Genome Institute is to serve the scientific community as … … For sequencing projects, once work is under way, raw sequence data is released to NCBI’s Sequence Read Archive on … the completion of a project, the JGI makes the assemblies, gene annotations, and analyses available to the community at …

… and require constant developments to meet the ever-changing demands of our users. … Download plant, algal, fungal … of microbial communities based on their metagenome sequence, in the context of reference isolate genomes … host taxonomy, conjugation potential, antibiotic resistance genes, and ecosystem information. … The IMG/VR database …

The JGI leverages its existing partnerships and develops others providing complementary expertise to advance the science and serve … to support plant and other efforts. The JGI works closely with DOE computational facilities (e.g., the …

…   The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is a national user facility located at … JGI consists of around 280 researchers and support staff in the Integrative Genomics Building in Berkeley, …

… fantastic diversity of cell types and associated organisms, including fungal and bacterial symbionts, detrimental … partners. We use a variety of genomics-powered tools to study this complexity, including single-cell and spatial transcriptomics barcode-based genetics (RB-TnSeq), and computational genomics to better …

… along with their associated viruses and mobile genetic elements. Beyond exploring and characterizing … clades. We leverage  genome-resolved metagenomics and targeted gene searches to expand representation of … comprising the largest public collection of plasmid sequences identified from genomes, SAGs, MAGs, metagenomes …

Research Experience (CURE) that consists of coordinated hands-on experiments across fungal biology teaching … species.  Students collect fungi, sterilize tissue, isolate genes and more. The metadata then goes into iNaturalist. … and distribution of fungal genome datasets. It includes JGI-sequenced and publicly available datasets encompassing a …

The Joint Genome Institute's DNA Synthesis Platform capabilities support researchers exploring how to convert sequence into functional assessments. This is done by synthesizing genes, pathways, and whole chromosomes for bioenergy, …

Kerrie Barry or Vivian Ng Prokaryotic projects: Tijana Glavina del Rio , Danielle Graham , or Miranda Harmon-Smith DNA … address, click the “Request email change” link. This will generate an email that will go to an administrator to … I request a culture/slant/DNA of an organism that has been sequenced at the JGI? … How do I check the current status of …