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The Megadata of Lake Mendota - Part 1: Many, Many Mers
Lake Mendota sits right next to the University of Wisconsin, … Trina McMahon's lab has been sampling the microbes of that lake for over 20 years, to understand how the freshwater … 3 episodes are the story behind that giant assembly from Lake Mendota. In this episode: the software evolution that …
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Microbial life under ice: Metagenome diversity and in situ activity of Verrucomicrobia in seasonally ice‐covered Lakes
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Effects of Polar Light Cycle on Microbial Food Web
Populations of Antarctic lake microbial communities change with the seasons. The … Light-harvesting bacteria (phototrophs) in Antarctica’s Ace Lake defy the norm when it comes to nutrient cycling in … of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley …
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Scientific Advisory Committee
… overview of the JGI. The SAC is chartered to render advice, guidance, and counsel on the effective management and … of CSP projects and, with concurrence from the DOE Office of Biological and Environmental Research (BER) program, set the final sequence allocation for this program. …
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Natural Prodcast Episode 9: Roger Linington
Apple Podcasts or wherever you’re getting this and tell me why you’re listening. DAN: But, now, here’s Natural Prodcast … Absolutely.  ROGER:  If I want to be provocative, I have noticed that many talks about biosynthesis start by saying … And that’s been followed by developments in pulse sequences and improvements in the ways in which you acquire …
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Natural Prodcast Episode 17: Cassandra Quave
… that’s how I got on that path of instead of wanting to practice medicine, I decided I want to discover and make … culture-disconnected. Like we’ll take some soil samples and sequence all the bugs out of that or whatever. And so I was … methicillin-resistant Staphylococcus aureus . Can you share why finding treatments for these microbes is so important? …
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Ice cover extent drives phytoplankton and bacterial community structure in a large north‐temperate lake: implications for a warming climate
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The Megadata of Lake Mendota – Part 3: Boating Out to David Buoy
… our series on a giant metagenome assembly from Wisconsin’s Lake Mendota. In the last two episodes, we’ve covered the … this project. But every part of this project depends on lakewater samples — so this episode is a look at how …
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The Megadata of Lake Mendota - Part 2: Souped Up Computing
… the story of a giant metagenome assembly from Wisconsin’s Lake Mendota. In this episode: a look at the supercomputing …
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Synthetic Biology Lab
We focus our efforts on integrating database mining and sequence design with scaling the production of large, … developing methods for converting digital information from sequence databases into biotechnological or environmental …
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Natural Prodcast Episode 14: Nigel Mouncey
… as well as the fermentation process itself. And we built a nice modeling feedback loop for the fermentation work, which … to some people more about down the road. Email Nigel! He’ll sequence whatever you want!  [LAUGHTER]  NIGEL MOUNCEY: We … people a chance to see our amazing new home.  DAN: Very nice. All right, cool. Hopefully everything is a little bit …
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New Lineages of Life Group
… and eukaryotic microbes and viruses in environmental sequence data. We use multi-omics (metagenomics, …
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