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Nadine? NADINE ZIEMERT: Yes, perfect. I’ve heard it in all variations, and I think that was perfect. DAN UDWARY: I … where– I know you really dug into the evolution on that system. Did that affect the work that you’re doing now? NADINE … I think GTDB also started that. But I think taxonomy and genomic data are still kind of a mess. DAN UDWARY: Yeah, …

The central mission of the JGI’s Genomic Technologies department is   … to focus on expanding molecular capabilities and functional genomics, scaling capacity through end-to-end automation, …

JGI-led team significantly expands the global diversity of large and giant viruses. While the microbes in a single drop … co-cultivated with amoeba or with their hosts, though metagenomics is now making it possible to seek out and … lineages in the NCLDV group infect mainly protists and algae, and some of them have genomes in the megabase range. …

The JGI Project Management Office carries out a number of activities … with our facility. This includes help with: preparing a Statement of Work, completing a formal User Agreement, and … PMO Lead, Metabolomics Program Kerrie Barry Plant and Algal Genomics Natasha Brown Supply Chain Manager Tijana Glavina …

… anything to use natural products necessarily. Fungi are large. They’re microbes, but they’re large microbes. And … were associated with getting good transformation systems going. That has a lot to do with, well, the fact that … every environment you can think about.   DAN: What kind of genomic resources are available these days for the natural …

The Fungal & Algal Program Advisory Committees is chartered by the Science Program Heads and …

Research uncovers the genetic foundations that helped plants conquer … scientists sequenced the genomes of four  Zygnematophyceae algae, which were isolated from diverse freshwater … life.  These led to highly detailed assemblies for three strains of  Zygnema circumcarinatum . Published  May 2024 …

… fungal and microbial genomes and metagenomes — top-quality genomic data, open to all researchers. … The JGI Genome … system. … IMG/PR is a plasmid genome resource featuring the largest collection of plasmids automatically identified from … and conduct comparative and genome-centric analyses of algae, while also encouraging community engagement and data …

Eukaryotic projects: Kerrie Barry or Vivian Ng Prokaryotic … sample and project metadata, and to access JGI tools and systems. … Go to the “ edit contacts ” page in your account. … Mycocosm (citation: https://doi.org/10.1093/nar/gkt1183 ) Algae: Phycocosm (citation: …

The JGI’s Metabolomics Program works to uncover the roles of small molecules in biological systems, linking them with genomic data to enhance our understanding of genome science, …

… similar or analogous to what’s going on in terrestrial systems with plants making toxins and so on and so forth. And … found out all kinds of weird things. Glucose is toxic to a large number of marine bacteria. Do you believe that? I … in the process. We now have cell pellets. And we’re pulling genomic DNA out of those cell pellets. So, we’re about ready …

… approaches to assess microbial activity across ecosystems.  By studying microbial communities and their … evolutionary time scales.The Metagenome Program combines large-scale, time-series metagenomic data with detailed characterization of model systems …