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Fungal & Algal Program
… biocontrol agents dramatically affect plant health. The  1000 Fungal Genomes Project is a five-year project to sequence 1000 fungal genomes from across the Fungal Tree of Life, …
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Frequently Asked Questions: Project Management
… using the Work Initiation Process (WIP) interface.    For commonly asked questions about JGI’s proposal calls and … be accessed via the Genome Portal , at the following sites: Microbes: IMG (citation: https://doi.org/10.1093/nar/gkaa939 ) Metagenomes and Single Cells: IMG/M   …
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The genomic basis of trophic strategy in marine bacteria
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Secondary Metabolites Program
… … Development of cell-free based expression platforms: Only 10-20% of BGCs are expressed under standard laboratory … Tools are provided to display annotation data from many common software tools, and from many users, so that the data …
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Adaptation strategies of giant viruses to low-temperature marine ecosystems
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IMG Group
… mis-assignment of species names in genomes spanning nearly 18% of all existing species. Additionally, the complete …
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JGI@25: Studying Sorghum’s Survival Skills
Plant Genome roster. Sorghum has an important feature in common with certain other cereal crops: It performs C4 … crop shares sorghum’s hardiness, so understanding sorghum’s survival secrets could change not only how we use and grow … for Sorghum bicolor . Since then, 2,993 publications, 107 patent applications, and 53 patents have cited that …
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Metagenome Program
… advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work … and many other applications. By understanding how microbes contribute to ecosystem functions, the Program …
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Microbiome Data Science Team
… and massive reconstruction of genomes from uncultivated microbes (Nature 2019). Other projects in the group include … urban microbiomes and antimicrobial resistance. Cell . 184(13):3376-3393 Almeida A, et al. (2020) A unified catalog of … of metagenomics software. Nature Methods  14(11):1063-1071 Bowers RM, et al. (2017) Minimum information about a …
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Phosphate transporters in marine phytoplankton and their viruses: cross‐domain commonalities in viral‐host gene exchanges
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Plant Program
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JGI@25: Mapping Switchgrass Traits with Common Gardens
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that … switchgrass is among the JGI Flagship Plants . Since 2007, the JGI has been working on identifying switchgrass … and model species. The following year saw the beginnings of common switchgrass gardens to track crop productivity across …
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