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… analysis techniques to explore the vast and diverse world of microbes. Studying bacteria and archaea, including those … The program aims to generate high-quality genomic datasets, particularly for uncultivated microorganisms, by sequencing … with isolate collections to complete large-scale sequencing projects, including 10,000 Actinomycetota strains and 10,000 …

… — before any work can begin, including the submission of samples for sequencing, or the submission of sequencing … indemnification, patent rights, rights in technical data, project reporting to the DOE, and publication requirements. … to a new commercial institution requires approval by all parties. … After your proposal is approved, the Contracts …

And a little after that acquisition, I moved to another project. This time on vitamin C with a Gluconibacter .  And … were discovered originally by Eli Lilly, which then merged, part of that company merged with Dow to form Dow … work to link all this together and try to build a seamless pipeline that takes us through these different capabilities. …

… uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work … analysis through the IMG/M platform. Further, the JGI partners with the National Microbiome Data Collaborative ( … to information regarding genome and metagenome sequencing projects, and their associated metadata, around the world. … …

… are complex organisms that harbor a fantastic diversity of cell types and associated organisms, including fungal and bacterial symbionts, detrimental microbial … self-organize, influence, and are influenced by microbial partners. We use a variety of genomics-powered tools to …

Puri. He is an Assistant Professor from the Chemistry department at the University of Utah, so that makes him one of … in terms of their natural products chemistry, and he has a project with the JGI to synthesize the genes for and explore … it! So, that’s this episode. I still have more stuff in the pipeline, including another recording made at SIMB, and any …

Developing state-of-the-art data processing and analysis pipelines for the interpretation of microbiome omics data … Microbial Genomes (IMG) data management system … As part of this project, pairwise average nucleotide identities (ANI) and …

JGI Director to provide a scientific and technical overview of the JGI. The SAC is chartered to render advice, guidance, … at the JGI; and overview of the Community Science Program (CSP). A crucial job of the committee is to take the input … from the CSP Proposal Study Panel on prioritization of CSP projects and, with concurrence from the DOE Office of …

… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural … where I was a graduate student. Aflatoxin, of course, is a fungal natural product which is a liver toxin when humans … so I’m hoping we can follow up with him again as the project progresses! If you’re interested in RiPPs, I’ll put …

… research is focused on the discovery and characterization of novel bacterial, archaeal and eukaryotic microbes and … to identify new divergent lineages and expand the Tree of Life. We then investigate the coding potential to find … T Woyke (2022) Giant virus biology and diversity in the era of genome-resolved metagenomics. Nature Reviews Microbiology …

Software engineers in the Synthetic Biology Informatics Group develop, deploy, and maintain software that support the JGI’s Synthetic Biology Program .  … which track samples through the JGI’s Synthetic Biology pipeline as well as provide process automation support …

… other plant-associated fungi. Their analysis identified fungal gene families that help determine if these fungi act … but not all plants and fungi can form such symbiotic partnerships. To learn more about these other plant-fungal … on the fungal Tree of Life through the 1000 Fungal Genomes Project. Hacquard’s group had assembled a mycobiome culture …