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Natural Prodcast Episode 9: Roger Linington
… advancement in sort of both areas. And I suspect that no single change will resolve the problem. But that stepwise … both on the NMR side and the mass spec side. So the single biggest advancement in NMR was the development of … Is it worth doing replicates? What do you do about variations in concentration? How do you design the …
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A Collaboration to Improve Plant Genome Annotations Across Species
… To provide broad plant genomic capabilities, the DOE Joint Genome Institute works … updateable transcriptome resource spanning diverse plant species. It was developed to improve plant genome … handling 18 different species is beyond the capacity of a single lab. Growing different species poses significant …
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Natural Prodcast Episode 17: Cassandra Quave
… of infectious or inflammatory disease and these same species are being used not just by one generation but by … and other natural product libraries, so not relying on single crystal X-ray diffraction, but looking actually at … for testing. But in those, they didn’t get down to single compounds. There were only a few papers that got into …
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Single Nucleotide Polymorphism Charting of P. patens Reveals Accumulation of Somatic Mutations During in vitro Culture on the Scale of Natural Variation by Selfing
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Frequently Asked Questions: Project Management
… You can request a JGI Single Sign On account at https://signon.jgi.doe.gov . This … https://doi.org/10.1093/nar/gkaa939 ) Metagenomes and Single Cells: IMG/M   (citation: … of your genomes Microbial (IMG–ER) Metagenome and Single Cell (IMG/ M-ER) Fungal (Mycocosm) Algal (Phycocosm) …
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Natural Prodcast
… metabolites all refer to the chemicals that make species unique and different from one another. They are …
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Fungal heavy metal adaptation through single nucleotide polymorphisms and copy‐number variation
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Genome Insider
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Genomes of Three Methylotrophs from a Single Niche Reveal the Genetic and Metabolic Divergence of the Methylophilaceae
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Community Science Program
… PIs who have never led a JGI project, and the Functional Genomics call is for projects that translate genomic information into biological function. The  New Investigator and Functional Genomics calls do not require an LOI.  Projects will be …
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Natural Prodcast Episode 4: Nancy Keller
… aflatoxin being a secondary metabolite from an Aspergillus species that is pretty toxic – can cause liver cancer and … every environment you can think about.   DAN: What kind of genomic resources are available these days for the natural … alone – I’m interested in pathogens. It’s just never a single microbe. And we have several recent papers and are …
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Natural Prodcast Episode 1: The Primer, Part 1
… that might need special technology for DNA sequencing, genomics, metabolomics, and synthetic biology, that maybe … at MIT, and I studied microbial ecology. I studied Vibrio species in the ocean, so heterotrophic bacteria. Now, we … that I’m looking at it with, you know, it’s within a species or microbial population, you have some set of shared …
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