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An Addiction Crucial to a Fungus’ Reproduction
… A fungus relies on bacteria to regulate key components of its reproductive machinery The Science To better understand how beneficial organisms (symbionts) are transmitted between … This research was supported by the National Science Foundation and the National Institutes of …
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FICUS Overview
… The Facilities Integrating Collaborations for User Science (FICUS) initiative was established in 2014 to encourage and enable researchers … no cost to the user and no granting of funds. All data is made publicly available in accordance with  JGI’s Data … undergo technical review by JGI staff as well as staff at the other participating facilities, who consider …
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Substrate-Specific Differential Gene Expression and RNA Editing in the Brown Rot Fungus Fomitopsis pinicola
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Genome sequence of a white rot fungus Schizopora paradoxa KUC8140 for wood decay and mycoremediation
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Institutional User Agreements
… Every approved proposal starts with a User Agreement — before any work can begin, including … of samples for sequencing, or the submission of sequencing data for synthesis. This agreement, required by the DOE for … binding contract.   All User researchers must have their home/employing institution sign a JGI Non-Proprietary User …
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How to Submit Sequencing Samples
… Below is a brief description of the process needed to prepare … on accessing sample-level reports and tracking statuses.  Please follow the steps outlined below. Click the drop-downs to learn … 1) Review JGI sample QC requirements and protocols Obtaining DNA and RNA of suitable quantity and …
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Partnerships: Myco-Ed
… The Mycological Curriculum for Education and Discovery  (Myco-Ed) is a Course-Based … original data for improving fungal genomic resources empower students through isolation and genome sequencing of new … 300+ students 800+ iNaturalist observations All MycoEd protocols, course materials and bioinformatics exercises are …
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A Step Toward Controlling Soybean Rust
… The United States  is the world’s leading soybean producer , and soybeans are used to produce biodiesel. The fungus  Phakopsora pachyrhizi causes Asian Soybean Rust … better strategies to counter soybean rust disease. Soybean itself is a  JGI Flagship plant genome , and JGI  published …
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Natural Prodcast Episode 18: A CSP Primer
… DAN UDWARY: It’s been a while, but Natural Prodcast is back again … JGI to do real journalism, and we wish her all the best. Later on, I’ll introduce my new co-host, who I’m really … you have questions about project relevance or experimental protocols, contact Deputy for User Programs, Tanja Woyke , …
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How Filamentous Fungi Sense Food
… Tracing gene regulatory networks in the model fungus  Neurospora crassa . The … used in the biotechnology industry to produce enzymes, proteins, and other chemicals. Summary Filamentous fungi are … P01 GM-068087 “Functional Analysis of a Model Filamentous Fungus” and that are publicly available at the Fungal …
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DNA repair enzymes of the Antarctic Dry Valley metagenome
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Data Policy
… Data produced and released by the US Department of Energy … (DOE) Joint Genome Institute (JGI) are subject to the following Data Policy. It is our mission to support open data and … recognize the need to have a limited and time-sensitive protection of certain types of data to support their use by …
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