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Bacteria and Fungi Divvy Up the Work in Forest Floor
Bacterial enzymes play second fiddle to those from fungi when it comes to breaking down tough plant fibers. The … activity teems beneath your feet. Both bacteria and fungi have genes that can break down plant fibers. But are … is a striking division of labor between the two groups. Fungi are much more active in degrading plant matter, and …
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JGI@25: Following Fungi that Pry Apart Plant Polymers
… of tough plants. Thanks to gut microbes — namely, anaerobic fungi — these animals are able to pry apart plant polymers … use to bust biomass apart. She and her team find these fungi, and their enzymes, primarily in animal poop.  “As an … diversity.”  Within that diversity of bacteria and fungi, O’Malley and her team are amassing all kinds of …
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Natural Prodcast Episode 2: The Primer, Part 2
… bacterial sacred metabolite, and ergot alkaloids come from fungi, and Taxol from plants. Plants, fungi, bacteria, … is similar to primary metabolism. So if you were, you know, sequencing an organism for the first time, and you’ve never … more knowledge you can generate. So that’s why we are still sequencing lots of stuff, and why the JGI is a key driver in …
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Fungal Friends or Foes in Plant Roots
Uncovering associations between plant roots and fungi that can help or harm plant host health. The Science … and enabling future metagenomics studies.   … The sequencing project was funded by the U.S. Department of … within the framework of CSP 1974 “1KFG: Deep-sequencing of ecologically relevant Dikaria”. This work was …
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Natural Prodcast Episode 7: Ben Shen
… started collaborating with Ben and his group to work on sequencing, synthesis and genome mining technology to help … because – mainly it’s due to the emerging technology on DNA sequencing and synthetic biology. But also the metagenomics … penicillin from the fungal species – probably told us that fungi could be very productive sources for, say, biological …
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JGIota: A Biofuel Breakthrough in Anaerobic Fungi with Michelle O'Malley and Tom Lankiewicz
Santa Barbara discuss the importance of studying anaerobic fungi, as well as a recent discovery that turns scientific …
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Offerings & Capabilities
… science by generating data in three overarching categories: Sequencing, Synthesis and Metabolomics. Strong internal …
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Natural Prodcast Episode 1: The Primer, Part 1
… – problems that might need special technology for DNA sequencing, genomics, metabolomics, and synthetic biology, … natural chemical compounds that you find in plants, fungi and bacteria, basically all living things. When your … the JGI. And so now here at the JGI, I work with all of the sequencing data that the JGI produces to try to find and …
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CSP Functional Genomics
… form and are reviewed annually. For accepted proposals, sequencing, synthesis, metabolomics and analysis will be …
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User Support Analysis Group
… development of automated analysis pipelines for standard sequencing products performed at scale. Our group also …
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Special Initiatives & Programs
Overview The JGI provides sequencing, synthesis, and targeted metabolomics support for … a core facility instead. Proposals may not exceed 10 Tbp sequencing, 500 kbp synthesis, and 200 polar/500 nonpolar … to expand on their DOE-BER funded work with additional sequencing, synthesis, or metabolomics should apply to one …
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CSP Large Scale Call
… and track record of the applicant. For accepted proposals, sequencing, synthesis, metabolomics and analysis will be …
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