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Prevalent genome streamlining and latitudinal divergence of planktonic bacteria in the surface ocean
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Mission
… by the Biological and Environmental Research program, the Joint Genome Institute provides advanced genomic capabilities, … of Energy.   The JGI provides integrated high-throughput sequencing, DNA design and synthesis, metabolomics and … energy and environmental mission objectives. Fungi, algae, bacteria, archaea, viruses, and microbial communities of …
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Natural Prodcast Episode 4: Nancy Keller
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s … been dominated for … well, as long as I can remember, by bacterial research.  So it was great to hear her passion and … out introns and dealing with, you know, weirdness in the sequence. You know, some clusters are not clustered…   …
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The Mutualist Laccaria bicolor Expresses a Core Gene Regulon During the Colonization of Diverse Host Plants and a Variable Regulon to Counteract Host-Specific Defenses.
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Natural Prodcast Episode 1: The Primer, Part 1
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s … – problems that might need special technology for DNA sequencing, genomics, metabolomics, and synthetic biology, … chemical compounds that you find in plants, fungi and bacteria, basically all living things. When your crazy Aunt …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
A group led by JGI scientists have made strides in improving and applying a method that allows researchers to quickly modify diverse bacterial genomes. In 2019, the JGI’s Yasuo Yoshikuni and … domesticate some 60 strains, inserting into them a genetic sequence that acts as a “landing pad.” Mouncey adds, “Once …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
Bacterial enzymes play second fiddle to those from fungi when it comes to breaking down tough plant fibers. The Science Walk in a temperate … So, to be able to identify proteins, the team compiled DNA sequences (metagenomes) and messenger RNA sequences …
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RegPredict: an integrated system for regulon inference in prokaryotes by comparative genomics approach
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Arabidopsis Root Microbiome Microfluidic (ARMM) Device for Imaging Bacterial Colonization and Morphogenesis of Arabidopsis Roots
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New Research Finds Flagella in the Terrestrial Roots of Marine Bacteria
… s ditched their flagella and other traits when migrating back to the ocean. The Science Scientists have … flagella in an unexpected place: hot spring-dwelling bacteria from the phylum C hloroflexota . Research shows … organisms to swim around. However, genome and metagenomic sequencing conducted by the U.S. Department of Energy Joint …
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Natural Prodcast Episode 9: Roger Linington
… of Natural Prodcast. This week, Alison and I talk to Roger Linington, from Simon Fraser University in British Columbia, … more familiar with the, sort of, chemical analytics and identification side of that problem. And I see all sorts of … And that’s been followed by developments in pulse sequences and improvements in the ways in which you acquire …
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Microfabrication of a Chamber for High-Resolution, In Situ Imaging of the Whole Root for Plant–Microbe Interactions
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