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… are complex organisms that harbor a fantastic diversity of cell types and associated organisms, including fungal and … single-cell profiling methods, including single-cell RNA-seq, single-cell ATAC-seq, and spatial transcriptomics … of plant/environmental responses … Selected Publications … Research Team Alumni … For further details, …

… group aims at improving our collective understanding of ecological and evolutionary parameters driving virus:host … overview and major challenges of host prediction methods for uncultivated phages.  Current Opinion in … abundant ocean viruses.  Nature . 537:689-93. … Selected Publications … For further information contact the Group …

Secondary Metabolites Program focuses on the exploration of secondary metabolites across bacteria, fungi, algae and … platforms, tools and data for deciphering regulatory networks, and refining experimental approaches to explore the … by in vitro-sequencing (RIViT-seq) to identify RNA polymerase-sigma factor targets, and have expanded the …

The JGI Project Management Office carries out a number of activities to facilitate … work and outline roles and responsibilities resulting in a formal Statement of Work (SOW). All work performed at the … access your data, share with collaborators, and coordinate publication with JGI scientists. Synthetic DNA constructs …

… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … and SIO. Oh, I should say what those are. Brad: What’s SIO, for all those listeners out there? Dan: Scripps Institution … Sequencing Program, and they worked with us to sequence two genomes. Those were of Salinospora tropica and arenicola …

… in sequencing technologies have led to an abundance of microbial genomes becoming available to the global … the microbial diversity we know about, and proposes a path forward to curate and cultivate what is still unknown.  “We … to revive the art of hands-on microbiology and experimental validation.  Microbes run the world, playing key roles in …

… schedule. This should be coming out on the first Thursday of the month, just like I promised. Now I just have to make … at the University of Illinois at Urbana-Champaign. I had a two body problem, and it was a really great opportunity to … actually be. And so we are specifically looking at non-ribosomal peptides, looking in genomes for ones that are …

… … DAN: You’re listening to the US. .Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … sending signals. But really unpacking that complicated network of chemistry and communication is what I’m really … MARC: That is a perfect way to put it. ALISON: She’s an international ambassador? MARC: Yeah, I believe it was 2012 when …

… automations for DNA design, assembly and analysis Overview of synthesis products The JGI DNA Synthesis platform enables … up to ~150 Kb in length  Pooled libraries such as sgRNA, promoter or MoClo assemblies … Check out our … for assembly by Gibson, Yeast recombination and Golden Gate methods … gRNA-SeqRET … BOOST … Synthesis Platform Lead … …

… … DAN: Welcome back for episode 9 of Natural Prodcast. This week, Alison and I talk to Roger … from the ICBG training program, which stands for International Cooperative Biodiversity Groups, and it’s this … mining, and how we might start to better connect those two things, because I think that’s ultimately what needs to …

… as user facility that aims to provide access to state-of-the-art DNA synthesis and assembly technologies to the broader community.  We focus our efforts on integrating database mining and sequence design … enabling ever-higher levels of throughput. We also develop methods for efficient QA/QC based on next-generation …

… … DAN: Hello, everyone, and Welcome back for Episode 14 of Natural Prodcast . There’s been a lot going on, so I took … on the way – I’m going to try to keep them coming out every two weeks for a while – so I hope you’ll be listening. But … help the Society grow. And so I’ve been the chair of the publications committee for the last, what is it now, five …