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Natural Prodcast Episode 24: Jackie Winter and SMC
Hey, everyone! Welcome to the “Self Promotion Episode” of Natural Prodcast. A little bit of a bonus episode, since I’m off schedule, but this is an important one that … And I think a lot of times, too, when we even look at publications, it’s always positive data, right? No one ever …
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Natural Prodcast Episode 20: Brian Bachmann
… … DAN UDWARY: Hey everyone and welcome back to a new session of Natural Prodcast. I’ve got two things I wanted to tell … which includes screening methods, genome mining in cave microbiomes, and using engineered biosynthetic pathways and … something that strikes your fancy when you start collecting samples for later processing? BRIAN BACHMANN: Yeah, well, …
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Cataloging the Microbes that Manage the Health of River Systems
Database provides details on river microbes in 90% of US continental watersheds. The Science In a recent Nature … and agriculture. Understanding the compositions of river microbiomes—who the core microbes are and what they do—can … The JGI sequenced over 1,000 metagenomes and established standardized sequencing protocols so that researchers could …
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Who We Are
…   The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is a national user facility … as the DOE Systems Biology Knowledgebase and the National Microbiome Data Collective.        … Learn more about our …
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Synthetic Biology Lab
The Synthetic Biology lab is divided into a DNA synthesis production group and a synthetic … as user facility that aims to provide access to state-of-the-art DNA synthesis and assembly technologies to the broader community.  We focus our efforts on integrating database mining and sequence design with scaling the …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
Large-scale comparative analysis leads to identification of biosynthetic gene clusters for novel secondary … fill in the gaps,” she added. DSMZ not only preserves a standardized culture collection of international renown, … resource, but also yielding and supporting many high-impact publications ,” emphasized Markus Göker, who managed the …
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Natural Prodcast Episode 7: Ben Shen
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s … and synthetic biology. But also the metagenomics and gut microbiome, as I think that it’s like a perfect storm in …
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Natural Prodcast Episode 8: Eric Schmidt
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … rich and underappreciated. And we’ve worked both with the microbiome. So, with symbiotic bacteria that live in animals … you’d like to read more about this, I highly recommend his publication last year, “The Biosynthetic Diversity of the …
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Viral Genomics Group
… critical ecosystem functions and affect global nutrient cycling, however they do so under strong constraints exerted by … group aims at improving our collective understanding of ecological and evolutionary parameters driving virus:host … abundant ocean viruses.  Nature . 537:689-93. … Selected Publications … For further information contact the Group …
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CSP Large Scale Call
… is focused on genomic science projects that address sustainable biofuel and bioproducts production, leveraging systems-based … are encouraged to review the JGI’s sample requirements . Samples that are not available in a timely manner will delay …
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Secondary Metabolites Program
Secondary Metabolites Program focuses on the exploration of secondary metabolites across bacteria, fungi, algae and … growth, provide critical advantages to the organisms producing them, and are often involved in defense, nutrient … factors and determine their binding sites across multiple genomes. Computational prediction of heterologous …
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DOE Metrics
FY 2025 DOE Metrics Sequencing Quarter Total Bases (Trillions) Operating Hours Goal Actual Total* Actual % of Goal Goal (hours)** Actual Total Actual % Goal FY 2025 … the interpretation of microbial, metagenomic, or plant genomes. [Download PDF] End-of-year Goal – Develop one new …
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