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User Support Analysis Group
… We perform analysis for diverse experiment types, with main focus areas being genome variation, transcriptomics and epigenomics. Our work varies …
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Data Ecosystem
… The JGI is leveraging its current partnerships to offer new capabilities and … different organizations is discoverable and accessible. Linking the resources of powerful institutions like the JGI, … will be the development of tools and infrastructure for microbiome data science, and the development of new …
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Project Management Office
… to onboard users and guide them through the process of working with our facility. This includes help with: preparing a Statement of Work, completing a formal User Agreement, … Please review our FAQ in advance of contacting the PMO office.  … Before work can start on any approved proposal – including the submission of samples for sequencing, or the …
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Plant compartment and biogeography affect microbiome composition in cultivated and native Agave species
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A Plant Root Atlas for Tracking Developmental Trajectories
… A collaborative team led by Geoffrey Schiebinger at the University of British Columbia, Philip Benfey … the largest integration of single-cell datasets in plants and provides a foundation for still larger efforts in diverse plant species beyond models,” he said. Cole annotated cell …
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Variation in Root Exudate Composition Influences Soil Microbiome Membership and Function
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Natural Prodcast Episode 12: Nadine Ziemert
… of it. So it wasn’t only chemistry or only biochemistry or genetics. It was also ecology. It was also evolution. It was … Usually, in a lot of cases, we still have to go through publications to get proteins, and their functions, and all … transcriptomics, metabolomics, and natural products in plants, fungi, and microorganisms. If you want to …
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Data Policy
… and released by the US Department of Energy (DOE) Joint Genome Institute (JGI) are subject to the following Data Policy. It is our mission to support open data and … PIs or co-PIs) who wish to include use-restricted data in publications, or who wish to redistribute data in any way …
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Micro-Scale Applications Group
… The Micro-Scale Applications group explores the genetic makeup of natural microbial communities using a variety of cutting-edge approaches.  Our group also seeks out new … analytical standards to accurately measure environmental microbiome activity levels.This functional assay lets us …
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JGI-TMF Critical Minerals and Materials Call
… The joint Critical Minerals and Materials call represents a unique opportunity … provides customized analysis, the JGI also participates in publication of results. Go here for additionial information, … review by JGI staff as well as staff at the other participating facilities, who consider technical feasibility and …
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Natural Prodcast Episode 3: The Primer, Part 3
… be the software after it’s been installed on your hard drive. And then the protein would be the software actually … developed to the point that you could understand the genetics of secondary metabolism, it became possible to do … for a long time by many, many bacteria – and fungi and plants. And so that’s the power and the promise of, I guess, …
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Natural Prodcast Episode 8: Eric Schmidt
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s … rich and underappreciated. And we’ve worked both with the microbiome. So, with symbiotic bacteria that live in animals … transcriptomics, metabolomics, and natural products in plants, fungi, and microorganisms. If you want to …
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