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Secondary Metabolites Program
…   The JGI’s Secondary Metabolites Program focuses on the exploration of … algae and plants. These molecules, which are not essential for fundamental growth, provide critical advantages to the … optimization of cell- and cell free-based expression platforms, tools and data for deciphering regulatory …
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CSP Functional Genomics
The CSP Functional Genomics call is to enable users to perform state-of-the-art …
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Microbial Program
The JGI’s Microbial Program focuses on using cutting-edge sequencing, … inter-organismal interactions. These insights are crucial for addressing key environmental challenges, such as … … The IMG/M system serves as a community resource for comparative analysis and annotation of all publicly …
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JGI@25
Celebrating 25 years of genomics research 2022 marked the JGI’s 25th anniversary. We … solve energy and environmental challenges.  Commissioned for the JGI’s 25th anniversary, the JGI mural references …
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IMG Group
The IMG group owns and maintains integral components of JGI’s production workflow, and is responsible for the annotation and analysis of (meta)genomic, … of genome and metagenome datasets in a comprehensive comparative context. The IMG data warehouse integrates …
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JGI@25: Using Team Science to Build Communities Around Data
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … genomes that are both large and complex. The first publication of a genome generated by the OGG initiative — … plant history.”   … 1KFG project on MycoCosm … OGG on Phytozome  … Filling in the Plant Tree of Life … Fungal …
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How to Submit Sequencing Samples
Below is a brief description of the process needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes … QC results, SRA accessions, library names, and protocol and platform details. The Sample QC report lists all the samples …
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New Lineages of Life Group
Our research is focused on the discovery and characterization of … and biogeochemical cycles. Research Team    … A complete publication list available at Google Scholar. Schulz, C … The ISME Journal. 8 (8), 1634-1644 … Publications … For further details, please reach out to the Group Lead …
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Fungal Friends or Foes in Plant Roots
Uncovering associations between plant roots and fungi that can help or harm plant host … health and diversity, which can in turn boost yields for both food and for candidate bioenergy feedstock crops. …
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Offerings & Capabilities
The central mission of the JGI’s Genomic Technologies department is   ensuring users have access to cutting-edge … to focus on expanding molecular capabilities and functional genomics, scaling capacity through end-to-end automation, …
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DOE Metrics
FY 2025 DOE Metrics Sequencing Quarter Total Bases (Trillions) Operating Hours Goal Actual … 175     2,167     *Includes Illumina and PacBio sequencing platforms. **Operating Hours target is based on 98% of the total …
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Single Cell Research Group
Research in the Woyke laboratory focuses on the utility of … material of uncultivated taxa of interest. One such effort is targeted at environmental cells that are from … … Research Interests … Former Lab Members … Selected Publications … For further details, please reach out to the …
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