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… Data produced and released by the US Department of Energy (DOE) Joint Genome Institute (JGI) are subject to the following Data … is granted to proposal PIs, Co-PIs, and collaborators of any given proposal. Third parties (often referred to as … PIs or co-PIs) who wish to include use-restricted data in publications, or who wish to redistribute data in any way …

… for researchers to request the capabilities and expertise of both the Joint Genome Institute and the Molecular Foundry in one research … provides customized analysis, the JGI also participates in publication of results. Go here for additionial information, … JGI scientists as needed), and the work plan is written into a Statement of Work document. …

… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the … Secondary Metabolites Science Program, which I was hired into, and my job is to do cool research, and also to talk to … near this tree and so there was probably some historical evolutionary event where the DNA transferred from the fungus …

… Bill is a pioneer of marine natural products, getting into the ocean and looking for molecules from the very … that improve their survival. Those molecules, over evolutionary time, become targeted to certain biological … So, this was when we started saying, we have to have the genomes. We have to look at the full picture of these. And …

… Mass spectrometry based metabolomics Below is a table of standard product offerings, including a description of the product and deliverables as well as target cycle … Fungal Minimal Draft Lower coverage short-read whole genome shotgun sequencing Assembly, annotation ( Mycocosm ) …

… See below for examples of successful Letters of Intent to our Community Science Program Large-Scale Call, … to drought stress resilience: RNA-seq and metabolomic insights in lignin biosynthetic pathway edited populus … to soil carbon storage during simulated range shifts of plant-fungal symbionts …

… Genomics call is to enable users to perform state-of-the-art functional genomics research and to help them translate genomic information into biological function.  The emphasis is on projects … ‘omics capabilities to enhance understanding of gene and genome function, particularly those not readily achievable …

… that had remained largely unknown and underutilized by industry. When Director Nigel Mouncey joined the JGI in 2017, he brought with him 20 years of industry experience — and an opportunity to expand the … accessible, AI-ready large-scale data repositories for genome information with analysis tools for mining and …

… (Graphic: Neil Byers) The JGI launched the 1000 Fungal Genomes (1KFG) Project through a 2012 Community Science … and annotations for 35 species representing all major evolutionary lineages in the land plant tree of life.   As … genomes that are both large and complex. The first publication of a genome generated by the OGG initiative — …

… researchers focused on the full composition of genes, or pangenome, of the model plant  Marchantia polymorpha. Commonly known as liverwort, this was done to gain insights into gene families involved in adaptations seen in … the liverwort  M. polymorpha has been used as a model for evolutionary studies. Its place among early-diverging plant …

… that on a catastrophic scale from Baja California north into Oregon and beyond. The disease is known more commonly … trace its origins, the researchers engaged the DOE Joint Genome Institute (JGI), with support of the US Department of … was released to the public in a highly-cited 2006 publication in the journal Science . This provided a …