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Single Cell Research Group
… Research in the Woyke laboratory focuses on the utility of single-cell methods to access genetic material of uncultivated taxa of interest. One such effort is targeted at environmental cells that are from candidate phyla, major branches in the phylogenetic …
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Natural Prodcast Episode 20: Brian Bachmann
… DAN UDWARY: Hey everyone and welcome back to a new session of Natural Prodcast. I’ve got two things I wanted to tell … our interview this week is with Professor Brian Bachmann from Vanderbilt University’s Chemistry Department, where he … natural product chemistry in the first place? What’s your origin story? I usually start with that. But I didn’t do …
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Busting the Unbreakable Lignin
… New evidence shows anaerobic fungi can degrade the hardiest of plant components   The Science There are three main … down a plant for energy: Cellulose, hemicellulose and lignin, cumulatively called lignocellulose, are the primary … conducted RNA sequencing and alignment to the reference fungal  genome . The study’s pivotal NMR (nuclear magnetic …
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Natural Prodcast Episode 4: Nancy Keller
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … DAN: Welcome back to Natural Prodcast! This is episode 4! From here on out, for a while, we’re going to be presenting … sequencing, I understand. Do you want to tell us about the origin of that, or?   NANCY: Well, so, I’m involved in two …
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Metabolomics Program
… The JGI’s Metabolomics Program works to uncover the roles of small molecules in biological systems, linking them with genomic data to enhance our understanding of genome science, organisms, and ecosystems at the … Integrating genomics with metabolomics fuels the discovery  of novel metabolites, genes, and proteins. It also enables …
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Natural Prodcast Episode 18: A CSP Primer
… while, but Natural Prodcast is back again for another round of episodes. If you stick around for the next few months, … do the bioinformatics and to synthesize these results into publication? So there’s this really important because we … metabolism, I find, is that even though it may not be the original intent in the proposal depending on what sample …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… Across four forests, researchers have leveraged data from the 1000 Fungal Genomes project to form new connections between … registers the sound — one thing is for sure: there are lots of fungi around. Within a forest’s soil, hundreds of species … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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Mapping the Earth’s Hidden Fungal Kingdom
… Leveraging massive comparative genomics to decode millions of mystery genes and lay a future-ready foundation     Over … human lineage. Yet despite their ubiquity and ancient origins, fungi remain largely mysterious. Only about 200,000 … Earth's fungal kingdom. The manuscript reviews about 200 publications linking evolutionary history and innovations …
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… genome data, unlocking new potential for AI-driven studies of energy metabolism. The Science Researchers produced … all fungi, and found that some of these genes have moved from the mitochondria into the nuclear genome over … (grouping sequencing reads by their likely organism of origin) followed by phylogenomic analysis to confirm genuine …
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Natural Prodcast Episode 8: Eric Schmidt
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … week, we have our conversation with Professor Eric Schmidt, from the University of Utah. I’ve known Eric for a long time … where I was a graduate student. Aflatoxin, of course, is a fungal natural product which is a liver toxin when humans …
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Data Policy
… Data produced and released by the US Department of Energy (DOE) Joint Genome Institute (JGI) are subject to … the need to have a limited and time-sensitive protection of certain types of data to support their use by those generating data. The … PIs or co-PIs) who wish to include use-restricted data in publications, or who wish to redistribute data in any way …
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JGI-TMF Critical Minerals and Materials Call
… for researchers to request the capabilities and expertise of both the Joint Genome Institute and the Molecular Foundry … challenges in the sourcing, recovery, and utilization of critical minerals and materials. For accepted proposals, … provides customized analysis, the JGI also participates in publication of results. Go here for additionial information, …
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