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Guidelines for public database submission of uncultivated virus genome sequences for taxonomic classification
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An Automated Tool for Assessing Virus Data Quality
… specific guidelines and best practices for characterizing uncultivated viruses. Following up on those guidelines, JGI … those from the host organism. Without this prediction step, numerous genes for antibiotic resistance and secondary …
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Cultivating Symbiotic Antarctic Microbes
… recovered directly from environmental samples and cultivated microbes, researchers have been able to gain … and showed that the Nanohaloarchaeota grew only when cultivated with  Hrr. lacusprofundi . The team also found … analyses. The species harbors genes encoding SPEARE proteins—which contain  s erine  p roteas e ,  a dhesion …
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VPF-Class: taxonomic assignment and host prediction of uncultivated viruses based on viral protein families
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Micro-Scale Applications Group
… and sequence analysis to recover the genomes of uncultivated microbes. We also apply labeling strategies that allow us to select specific uncultivated microbes for sequencing based on their level of …
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Doubling Down on Known Protein Families
… Fleming. “This was a massive analysis of 1.3 billion proteins with massively parallel computations.”  Guided by … to study. Many of the microbes within them cannot be cultivated in lab settings. Since each microbial community … majority of these protein families belonged to bacteria and viruses, though 6 million of the sequences evaded …
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Sequencing Technologies & Products
… and sequence analysis to recover the genomes of uncultivated microbes. We also apply labeling strategies that allow us to select specific uncultivated microbes for sequencing based on their level of …
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Natural Prodcast Episode 17: Cassandra Quave
… of both plants and the peoples that have either cultivated or selected for certain varieties of those plants … I think on COVID that we’re getting ready to submit for publication and have found some interesting hits for that as …
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… set, the same 15 core genes — 14 encoding energy-production proteins plus one ribosomal protein gene — were present in every genome … metagenomes in the JGI's IMG portal for mitochondrial ribosomal RNA sequences. The next step applied metagenomic …
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User Support
… access your data, share with collaborators, and coordinate publication with JGI scientists. Synthetic DNA constructs …
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Mining New Frontiers: The Critical Minerals and Materials Joint Call
… cultures of fungi, algae, protists, bacteria, archaea, viruses, plants, including microbial communities and …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… of white. To researchers searching for sequences of RNA viruses in large data sets, their work may be akin to … cycles. While most organism’s genetic information is encoded in DNA, with RNA delivering the instructions inside … To this end, Kyrpides emphasized, the contributions of the numerous JGI science users in collecting and submitting …
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