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Genome sequencing and mapping reveal loss of heterozygosity as a mechanism for rapid adaptation in the vegetable pathogen Phytophthora capsici.
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Functional Gene Losses Occur with Minimal Size Reduction in the Plastid Genome of the Parasitic Liverwort Aneura mirabilis
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Natural Prodcast Episode 18: A CSP Primer
… UDWARY: It’s been a while, but Natural Prodcast is back again for another round of episodes. If you stick around for … do the bioinformatics and to synthesize these results into publication? So there’s this really important because we … (LAUGHS) Yeah. We do expect that or hope that a publication comes out of the work that’s done at the JGI. …
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Who We Are
…   The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is a national user facility located at … The JGI consists of 225 researchers and support staff in the Integrative Genomics Building in Berkeley, … The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is a high-throughput AI-centric …
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Natural Prodcast Episode 5: Brad Moore
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the science … from University of California (UC), San Diego and Scripps Institution of Oceanography (SIO). You can find the podcast on Apple , Google , Spotify , Stitcher , …
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DOE Metrics
… FY 2026 DOE Metrics Sequencing Quarter Total Bases (Trillions) Operating Hours Goal  Actual Total*   Actual % of Goal   Goal … 99.8% Q3 2026 175     2,164     Q4 2026 175     2,208     *Includes Illumina and PacBio sequencing platforms. …
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How to Submit Sequencing Samples
… the process needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes instructions on accessing sample-level reports and tracking … 1) Review JGI sample QC requirements and protocols Obtaining DNA and RNA of suitable quantity and quality has been …
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Sequencing Technologies & Products
…   Our Sequencing Technologies Group is well-integrated across JGI departments to ensure a robust offering of sequencing capabilities and products to our users. … An assay used for profiling transcription factor binding sites across entire genomes. This technology has been …
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Toward a Standards-Compliant Genomic and Metagenomic Publication Record
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A roadmap for equitable reuse of public microbiome data
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Environmental Genomics Group
… Research in the Eloe-Fadrosh group focuses on using genome-resolved metagenomic approaches to identify and characterize genomic information from uncultivated microbes and viruses. We … focuses on the assembly of metagenomic sequence data into microbial genomes, which is of fundamental value to …
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Natural Prodcast Episode 13: Francisco Barona Goméz
… DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast– a podcast about natural … Dr. Francisco (Paco) Barona- Goméz is a Principal Investigator at Cinvestav UGA-Langebio in Irapuato, … of natural product biosynthesis in bacteria ” The ActDES publication came out after we talked. It looks like a great …
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