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… to current problems facing humanity. A major focus are biofuel feedstock species and plant-microbe interactions, … a plant based bioeconomy where plants are a major source of chemical production and contribute to a healthier planet … the accuracy of functional predictions and speed up genome analysis. Additionally, the Plant Program is advancing …

… group aims at improving our collective understanding of ecological and evolutionary parameters driving virus:host … involves both experimental and computational exploration of uncultivated viral diversity, characterization of molecular mechanisms involved in virus:host interaction …

… Below is a brief description of the process needed to prepare and ship samples for … sample QC requirements and protocols Obtaining DNA and RNA of suitable quantity and quality has been the rate-limiting … step for many projects at the JGI. The quality of the starting material is one of the greatest predictors …

… DNA sequences to aid with genome assembly and transcriptome analysis of microbial, fungal, and plant research projects.  More … “regular” PacBio, since the low-input protocol involves PCR amplification of the library. 6mA and 4mC (~50x depth), 5mC … integrated high-throughput sequencing and computational analysis that enable systems-based scientific approaches to …

… Undergraduate Research Experience (CURE) that consists of coordinated hands-on experiments across fungal biology teaching labs. The purpose of the program is to: train students and professors in laboratory techniques and data analyses compile … Beyond providing a scalable solution for production of high-quality fungal reference genomes, this program is an …

… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … Pacific Ocean, or in the bay, and be able to do chemical analysis, as well as transcript analysis. And what we’re … what happens. Dan: Very cool. Well, the word you’ve used multiple times today is fun. And I know, from working with …

… Hey, everyone! Welcome to the “Self Promotion Episode” of Natural Prodcast. A little bit of a bonus episode, since … And I think a lot of times, too, when we even look at publications, it’s always positive data, right? No one ever … tool. It’s the best thing that we have. And its rule-based analysis is second to none. And it’s the most valuable thing …

…   The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is a national … at Lawrence Berkeley National Laboratory. The JGI consists of 225 researchers and support staff in the Integrative … organisms. We provide access to large-scale datasets and analysis tools for genomes, metagenomes, and metabolomics …

… A collaborative team led by researchers at the University of Texas (UT) at Austin, the HudsonAlpha Institute for … biofuel yield through a changing future. Switchgrass has multiple naturally occurring ploidy levels, called … fitness, and adaptability. Using a combination of genomic, quantitative genetic, landscape, and niche modeling …

… Celebrating 25 years of genomics research 2022 marked the JGI’s 25th anniversary. We revisited a number of notable achievements that showcase our collaborations and … the JGI’s 25th anniversary, the JGI mural references dozens of iconic JGI contributions to advancing the frontiers of …

… and researchers more about the patterns and functions of environmental microbes. Researchers can use the tool to … predicted functional and metabolic roles across global metagenomes (within IMG).  The Impact The initial analysis highlights abundances of gene annotations that …