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An Automated Tool for Assessing Virus Data Quality
… CheckV can help researchers assess virus sequence fragments and data quality. The Science … are being recovered and identified from environmental samples (metagenomes). However, the quality and completeness of …
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Natural Prodcast Episode 9: Roger Linington
… Our download numbers keep going up, which continues to surprise and amuse me. I can’t tell, of course, whether this … lab, we were also quite focused on finding bioactive molecules and doing medicinal chemistry, doing development of … So rather than asking one question about one class of molecules or one particular target, we’re now very much – we’re …
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Natural Prodcast Episode 18: A CSP Primer
… energy and environment, and natural product molecules obviously play a huge role in ecology through cell-cell … time, if I constantly give it this kind of selection pressure really. And we have pipelines for that. So again, we … do the bioinformatics and to synthesize these results into publication? So there’s this really important because we …
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Institutional User Agreements
… before any work can begin, including the submission of samples for sequencing, or the submission of sequencing data for … rights in technical data, project reporting to the DOE, and publication requirements. An official with authority is … will send required paperwork to your institution. (Samples of the JGI User Agreement , JGI User Agreement for …
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Virus Discoveries that Keep Getting Bigger
… work — have quickly accelerated understanding of giant viruses. The Science In the last thirty years, in … the  E.   huxleyi virus, plays a key role in those cycles, as well. When the virus infects a bloom of  E. huxleyi … giant viruses. Further, single-marker gene based surveys allow researchers to use signature genes, rather …
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JGI Portals
… will be reused for further science.  Notices Data Portal files will be inaccessible July 22–July 24 for computing … Download plant, algal, fungal and microbial genomes and metagenomes — top-quality genomic data, open to all … of plasmids automatically identified from genomes, metagenomes, and metatranscriptomes. It provides rich data …
Learn more
Frequently Asked Questions: Project Management
… proposal calls and proposal submission, as well as examples of approved proposals, please visit the Proposals FAQ .  … detailing the quantity and quality requirements for samples submitted to the JGI can be found in our HERE (TK) .   … platform details. The Sample QC report lists all the samples received for a project, metadata about the samples, and …
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User Support
… requirements, define the scope of work and outline roles and responsibilities resulting in a formal Statement of … of Work (project roadmap) Users must prepare Materials (Samples) for Submission before they can receive an emailed … access your data, share with collaborators, and coordinate publication with JGI scientists. Synthetic DNA constructs …
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Project Management Office
… on any approved proposal – including the submission of samples for sequencing, or the submission of sequencing data for …
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Natural Prodcast Episode 13: Francisco Barona Goméz
… first proposed by two authors called Firn and Jones. I’m sure that people excited in natural product biosynthesis … and if people find it useful then we have a set of rules that we can stick to. DAN UDWARY: All right, well let’s … doesn’t matter if it has one extra carbon or two or one less, at the end of the day, it’s because it is a …
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Natural Prodcast Episode 5: Brad Moore
… I was pretty stoked to be able to participate in that for sure. Alison: So, tell us some more about that magic that … we’re even thinking of genes and connecting genes to molecules, which is something that, you know, we take for granted … in the area of biosynthesis, enzymology, and working with terrestrial organisms. And – but I knew all along right from …
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Natural Prodcast Episode 4: Nancy Keller
… here. And thanks so much for doing this.   NANCY: My pleasure.   DAN: I guess I wanted to start, maybe just by asking …   NANCY: Yeah, that’s a good question. Mine is probably a lesser-walked path. So my interest actually came from my … school.    ALISON: Where was this?   NANCY: This was in Lesotho. Lesotho is a little landlocked country, in southern …
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