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DOE Metrics
… FY 2026 DOE Metrics Sequencing Quarter Total Bases (Trillions) Operating Hours Goal  Actual Total*   Actual % of Goal   Goal (hours)**   Actual Total   Actual % Goal   FY …
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Natural Prodcast Episode 8: Eric Schmidt
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about … Utah. Dr. Schmidt is a natural products chemist who works in a wide variety of marine organisms, including sponges, … you’d like to read more about this, I highly recommend his publication last year, “The Biosynthetic Diversity of the …
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FICUS Overview
… The Facilities Integrating Collaborations for User Science (FICUS) … to more easily integrate the expertise and capabilities of multiple Department of Energy Office of Science National … provides customized analysis, the JGI also participates in publication of results. …
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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… Protein annotations provide insights into environmental … annotations with ratios of DNA sequence fragments from the ecosystems. Selecting a protein identified from their … predicted functional and metabolic roles across global metagenomes (within IMG).  The Impact The initial analysis …
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Natural Prodcast Episode 12: Nadine Ziemert
… DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s … Usually, in a lot of cases, we still have to go through publications to get proteins, and their functions, and all … that easily can identify secondary metabolite pathways in metagenomes, which is still hard to do. We are mining a lot …
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An Integrated Dataset to Understand Ecosystem Interaction
… yields a comprehensive tree and soil dataset for understanding the dynamic relationship between poplar trees and their … partners. The Science To help better understand how ecosystems work and how healthy they are, a recent data set  … Laboratory (Berkeley Lab). All of this information — 318 metagenomes, 98 plant transcriptomes and 314 metabolomic …
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Frequently Asked Questions: Project Management
… Kerrie Barry or Vivian Ng Prokaryotic projects: Tijana Glavina del Rio , Danielle Graham , or Miranda Harmon-Smith DNA … You can visit the Products & Offerings section of our website for more details, including … The majority of JGI projects come from the user community. Find out about JGI’s calls for proposals , and submit your …
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Effects of Polar Light Cycle on Microbial Food Web
… Populations of Antarctic lake microbial communities change with the seasons. The Science Light-harvesting bacteria (phototrophs) in Antarctica’s Ace Lake defy the … 4031). The work conducted by the US Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, …
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Pre-Cambrian roots of novel Antarctic cryptoendolithic bacterial lineages
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JGI@25
… Celebrating 25 years of genomics research 2022 marked the JGI’s 25th anniversary. … references dozens of iconic JGI contributions to advancing the frontiers of environmental and energy genomics. The …
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Digging into Microbial Ecosystems Deep Underground
… “Microbes underpin so much of what we see on earth in terms of nutrient cycles and … at: the role viral infection may play in other natural ecosystems. The video complements a recently published paper …
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JGI Portals
… The JGI’s data stewardship expertise and infrastructure enable a broad community of scientists and engineers to leverage our data to develop new algorithms, … Download plant, algal, fungal and microbial genomes and metagenomes — top-quality genomic data, open to all …
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