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FICUS Overview
The Facilities Integrating Collaborations for User Science (FICUS) initiative was established in 2014 … individual user facilities. A Letter of Intent is required. For accepted proposals, sequencing, synthesis, metabolomics … provides customized analysis, the JGI also participates in publication of results. … All proposals undergo technical …
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Mission
Biological and Environmental Research program, the Joint Genome Institute provides advanced genomic capabilities, … and resources. Our vision is to lead genomic innovation for a sustainable bioeconomy. ALL PROPOSALS must support the … or plant-microbe interactions, or on development of improved sequencing-based technologies are also welcomed but …
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Natural Prodcast Episode 24: Jackie Winter and SMC
Breaking Bad, I guess. But no, you trained me in how to genome mine, so thank you for that. And you had to put up … public. Things that you do to BGCs– you can add your own annotations and do things to the data — That all becomes … And I think a lot of times, too, when we even look at publications, it’s always positive data, right? No one ever …
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Natural Prodcast Episode 20: Brian Bachmann
I wanted to tell you about in this introduction. First and foremost, our interview this week is with Professor Brian … in the early 2000s called Ecopia, which was a very early genome mining company, back when DNA sequencing of natural … said that a rationale for doing this is to make analogs, improved analogs. But nobody does it! And not nobody, but …
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Special Initiatives & Programs
… sequencing, synthesis, and targeted metabolomics support for DOE-BER funded awards, including awards funded through  … in the BER funding call, proposals are NOT eligible for BERSS support through the JGI (with the exception of … science.  Projects include de novo generation of genome data, assistance in interpreting and/or building on …
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Genome Sequence of the Ethanol-Producing Zymomonas mobilis subsp. pomaceae Lectotype Strain ATCC 29192
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Expression of Phosphofructokinase Is Not Sufficient to Enable Embden-Meyerhof-Parnas Glycolysis in Zymomonas mobilis ZM4
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FICUS-NERSC/KBASE
The mission of the Joint Genome Institute is to serve the scientific community as a … completion of a project, the JGI makes the assemblies, gene annotations, and analyses available to the community at … more customized analysis, the JGI also participates in publication of results. … Submission … More on Sequencing …
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Data Ecosystem
… to both expertise and infrastructure to facilitate these efforts. Particular areas of emphasis will be the development … analyses, such as metabolic modeling, that go well beyond genome annotation and analysis. The JGI and KBase seek to enable …
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Natural Prodcast Episode 18: A CSP Primer
Menaka Wilhelm, who is the host of JGI’s other podcast, Genome Insider . If you’re a Genome Insider listener, then … in terms of the annotate, the assembly, the curation, QC, annotation of these data sets. For our eukaryotes, in … do the bioinformatics and to synthesize these results into publication? So there’s this really important because we …
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Secondary Metabolites Program
… algae and plants. These molecules, which are not essential for fundamental growth, provide critical advantages to the … factors and determine their binding sites across multiple genomes. Computational prediction of heterologous … gene transfer. … The SMC provides complete sequence and annotation data for secondary metabolite biosynthetic gene …
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Examples: Successful LOIs & Submissions
See below for examples of successful Letters of Intent to our … Genomics, and Facilities Integrating Collaborations for User Science calls. These documents have been shared … … Elucidating Sphagnum microbiome genetic interactions for improved growth at elevated temperatures … Adaptive …
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