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Partnerships: Myco-Ed
… genomic resources empower students through isolation and genome sequencing of new fungal species.  Students collect … Myco-Ed has:  ~50 lineages selected for sequencing 16 genomes released 20 members from 15 institutions 300+ … into undergraduate teaching laboratories with minimal overhead (cost of media, ITS sequencing and tissue …
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Metabolomics Program
… them with genomic data to enhance our understanding of genome science, organisms, and ecosystems at the molecular … microbes, and ecosystems. Identifying and analyzing primary and secondary metabolites helps uncover their roles in … experimental manipulations while being simultaneously imaged and sampled.  Combining collected metabolomics data …
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Frequently Asked Questions: Project Management
… listed on the “info” page for that organism on the Genome Portal . … You can view the status of all public projects on the JGI Genome Portal . The PI and all authorized users can also … of publicly available projects can be accessed via the Genome Portal , at the following sites: Microbes: IMG …
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Natural Prodcast Episode 7: Ben Shen
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the … of natural product compounds, Alison. They are – if you can imagine – two carbons in a triple bond attached to two … been out of these natural products. So this gives you approximately a 6% successful drug discovery rate.   And this is …
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Who We Are
…   The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is a national user facility located … The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is a high-throughput AI-centric … access to large-scale datasets and analysis tools for genomes, metagenomes, and metabolomics through its data …
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Frequently Asked Questions: Proposal Submission
… proposals are subject to JGI policies on Data Release and Publication .   Except for applicants to the CSP New … on our YouTube channel as well as in this episode of our Genome Insider podcast.  You can also contact … range from raw sequence data to well-annotated assembled genomes to synthesized DNA constructs to metabolomics data, …
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Natural Prodcast Episode 24: Jackie Winter and SMC
… Breaking Bad, I guess. But no, you trained me in how to genome mine, so thank you for that. And you had to put up … hotspots on the lake. So the lake is [INAUDIBLE] with climate change. I mean, right now– like last year, we had a … And I think a lot of times, too, when we even look at publications, it’s always positive data, right? No one ever …
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Plant Program
… basis of how plants have naturally adapted to varied climate and soil conditions around the globe to identify genes … improve the accuracy of functional predictions and speed up genome analysis. Additionally, the Plant Program is … Plant Flagship Genomes are selected through discussion with the JGI Plant …
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FICUS-NERSC/KBASE
… The mission of the Joint Genome Institute is to serve the scientific community as a … and readiness to begin work, checking such factors as genome size, polymorphism level, sample quality and … more customized analysis, the JGI also participates in publication of results. …
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Natural Prodcast Episode 1: The Primer, Part 1
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the … we’ll talk some more about the differences between primary metabolism and secondary metabolism, and we talk about … the tree – it almost certainly, you know, prevents some animals from eating the bark or something that makes them ill …
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Mining New Frontiers: The Critical Minerals and Materials Joint Call
… The Joint Genome Institute and the Molecular Foundry have launched a … free of charge, including data such as fully annotated genome assemblies or differential gene expression results. … for 3 years with the possibility for extension. Fungal genomes, for instance, can take up to a year or more to …
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… nearly tripled the available fungal mitochondrial genome data, unlocking new potential for AI-driven studies … nearly 10,000 new annotations of fungal mitochondrial genomes — the DNA found inside mitochondria, the … genes have moved from the mitochondria into the nuclear genome over evolutionary time. They also discovered more …
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