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Industry Engagement Program
… users that predominately come from the public sector: academic and government institutions — with capabilities that … joined the JGI in 2017, he brought with him 20 years of industry experience — and an opportunity to expand the … Industry Partners access to our vast set of resources:  JGI sequencing technologies include scaling technologies and …
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Natural Prodcast Episode 9: Roger Linington
… DAN: Welcome back for episode 9 of Natural Prodcast. This week, Alison and I talk to Roger … right? ROGER:  It’s one or the other, or possibly some hybrid of the two. Likely somewhere in between. DAN:  … Episode Transcript … This episode features our conversation with Roger Linington , from …
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Assemblathon 1: A competitive assessment of de novo short read assembly methods
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JGI-TMF Critical Minerals and Materials Call
… for researchers to request the capabilities and expertise of both the Joint Genome Institute and the Molecular Foundry … with nanoscale science, accelerating discoveries and developing transformative bio-based technologies that … provides customized analysis, the JGI also participates in publication of results. Go here for additionial information, …
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Partnerships: Myco-Ed
… for Education and Discovery  (Myco-Ed) is a Course-Based Undergraduate Research Experience (CURE) that consists of coordinated hands-on experiments across fungal biology … resources empower students through isolation and genome sequencing of new fungal species.  Students collect fungi, …
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Natural Prodcast Episode 18: A CSP Primer
… Natural Prodcast is back again for another round of episodes. If you stick around for the next few months, you’re … There’s a lot of manual work in terms of the annotate, the assembly, the curation, QC, annotation of these data sets. … do the bioinformatics and to synthesize these results into publication? So there’s this really important because we …
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FinisherSC: a repeat-aware tool for upgrading de novo assembly using long reads
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FICUS Overview
… to more easily integrate the expertise and capabilities of multiple Department of Energy Office of Science National User … provides customized analysis, the JGI also participates in publication of results. … All proposals undergo technical review by JGI staff as well as staff at the …
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Secondary Metabolites Program
… Secondary Metabolites Program focuses on the exploration of secondary metabolites across bacteria, fungi, algae and plants. These molecules, which are not essential for fundamental growth, provide critical advantages to the organisms producing them, and … The Secondary Metabolites Program targets the vast and underexplored reservoir of secondary metabolites produced by …
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… are being detected currently. Q:  Does JGI support hybrid long-read / short-read metagenome assemblies? A:  At … with CCS / Hi-Fi PacBio reads (i.e., reads with very low error rate), so our pipeline performs long-reads-only … but we don’t offer these at this time. Q:  How does the correction of the extended PacBio compare to doing polishing …
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Extreme Scale De Novo Metagenome Assembly
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Omega: an Overlap-graph de novo Assembler for Metagenomics
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