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Natural Prodcast Episode 20: Brian Bachmann
Yeah, I went to a SIMB meeting, Society for Industrial Microbiology meeting and– DAN UDWARY: Which is where we are … mechanistic enzymology to natural product biosynthesis to genomics to directed evolution– but it’s just the– it really … Ecopia and collaborators’ landmark genome mining paper: “A genomics-guided approach for discovering and expressing …
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Fungus Fuels Tree Growth
… organic matter, or as an endophyte, living between a plant’s root cells. The fungus is almost always found among and within poplar trees, and in an effort to understand its influence on the … or poplar, ( Populus trichocarpa ) is the fastest growing hardwood tree in the western United States, making it an …
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Metagenome Program
… such as quantitative stable isotope probing (qSIP)-metagenomics and metatranscriptomics, to metagenomics and metabolomics data, shedding light on microbial … microbial clades. We leverage  genome-resolved metagenomics and targeted gene searches to expand representation …
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Offerings & Capabilities
… to focus on expanding molecular capabilities and functional genomics, scaling capacity through end-to-end automation, … and further advancing sequence applications, single cell genomics, DNA synthesis, and metabolomics.   … Deputy of …
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Filling in the Plant Tree of Life
What if we understood plants and how they adapt to their ever-changing … But most available genomes are from narrow swaths of the plant tree of life. One project aims to change that. …
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Special Initiatives & Programs
… located in geographically distinct areas and use different plants both for laboratory research and for improving … (iSEE) and the Carl R. Woese Institute for Genomic Biology (IGB), and it will include 17 partner institutions. … set, or the refining of new technology (e.g., single-cell genomics; metagenomics, etc.).   The faculty-level scientist …
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CSP Functional Genomics
The CSP Functional Genomics call is to enable users to perform state-of-the-art functional genomics research and to help them translate genomic … review process or find details on the internal synthetic biology review process .  … Proposers are encouraged to …
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JGI@25
Celebrating 25 years of genomics research 2022 marked the JGI’s 25th anniversary. We … to advancing the frontiers of environmental and energy genomics. The two-story mural at the Integrative Genomics Building was painted by Berkeley-based artist Nigel …
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Institutional User Agreements
… rights in technical data, project reporting to the DOE, and publication requirements. An official with authority is …
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JGI Portals
… to meet the ever-changing demands of our users. … Download plant, algal, fungal and microbial genomes and metagenomes — … access, visualization, and analysis tools for comparative genomics of fungi. Mycocosm enables users to navigate across … data exchange. … Phytozome is the JGI's Plant Comparative Genomics portal. Families of related genes representing the …
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Microbial Program
… single-cell sequencing, resequencing, RNA sequencing and epigenomics. Expansion of sequence space:  The JGI generates …
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Natural Prodcast Episode 11: Marnix Medema
… it didn’t. However – and this was a proposal on synthetic biology of engineering gene expression in bacteria – … of hooks into IMG’s data. IMG being Integrated Microbial Genomics at JGI, a large data set of bacterial genomes. And … called “disease suppression”, where the microbiome of a plant, so the bacteria living on and inside the roots are …
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