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Natural Prodcast Episode 7: Ben Shen
… for every episode we put out. I actually put a lot of time into preparing those transcripts, so I hope somebody’s going … on DNA sequencing and synthetic biology. But also the metagenomics and gut microbiome, as I think that it’s like a … natural product – they also often surprise us by giving us insights, inspires us to discover the fundamentals and then …
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Industry Engagement Program
… As a National User Facility, the JGI serves more than 2,500 users that predominately come from the public sector: academic and … to support AI applications. In an effort to lead AI-driven genomic innovation to advance biotechnology, the JGI … equipment, and personnel. If a U.S. company uses private funds, the sponsor may elect to obtain the entire right, …
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Natural Prodcast Episode 18: A CSP Primer
… info about the CSP, FICUS, New Investigator and Functional Genomics calls. For my audience, all of these programs can … genomes. Fungal plant, algal genomes, a lot of effort goes into generating these data sets. There’s a lot of manual … do the bioinformatics and to synthesize these results into publication? So there’s this really important because we …
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Who We Are
… of Energy (DOE) Joint Genome Institute (JGI) is a national user facility located at Lawrence Berkeley National Laboratory. The JGI … of 225 researchers and support staff in the Integrative Genomics Building in Berkeley, California.  Our location at … Genome Institute (JGI) is a high-throughput AI-centric genomic science user facility located at Lawrence Berkeley …
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Natural Prodcast Episode 13: Francisco Barona Goméz
… to the Department of Energy Joint Genome Institute’s Natural Prodcast– a podcast about natural products and the … BARONA-GOMEZ: I think that the very first thing that got us into this is that we should, in any case, use definitions … I think the important thing to remember is that, thanks to genomics, we now know that it is very hard to find stuff …
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Community Science Program
… Science Program (CSP) provides the scientific community at large with access to high-throughput sequencing, … PIs who have never led a JGI project, and the Functional Genomics call is for projects that translate genomic information into biological function. The  New Investigator and …
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Natural Prodcast Episode 20: Brian Bachmann
… episode with her in the near future where we can dive into that. And I’m also dying to talk in more detail about … has to have a story. And it can be looking for drugs from marine organisms, in which case you get to go to exotic … mechanistic enzymology to natural product biosynthesis to genomics to directed evolution– but it’s just the– it really …
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Institutional User Agreements
… of samples for sequencing, or the submission of sequencing data for synthesis. This agreement, required by the DOE for … the legal authority to commit your institution or organization to the terms and conditions in the User Agreement. … rights in technical data, project reporting to the DOE, and publication requirements. An official with authority is …
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Natural Prodcast Episode 24: Jackie Winter and SMC
… And with Christian, I started getting a little bit more into fungi and learning the differences of all the genetic … as many as it did and how that became sort of a trend in genomics. So anyway, yeah, JGI has been working in secondary … And I think a lot of times, too, when we even look at publications, it’s always positive data, right? No one ever …
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Emiley Eloe-Fadrosh
… pursue her research interests in microbial ecology and metagenomics. Her current research focuses on leveraging … to identify and characterize genomic information from uncultivated microbes and viruses. Prior to joining the JGI, … at Scripps Institution of Oceanography. She stepped into the Metagenome Program Lead position in 2017. She also …
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Examples: Successful LOIs & Submissions
… as well as successful submissions to our CSP New Investigator, CSP Functional Genomics, and Facilities Integrating Collaborations for User Science calls. These documents … to drought stress resilience: RNA-seq and metabolomic insights in lignin biosynthetic pathway edited populus …
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New Research Finds Flagella in the Terrestrial Roots of Marine Bacteria
… enable organisms to swim around. However, genome and metagenomic sequencing conducted by the U.S. Department of … Studying their diverse metabolic capabilities offer insights into how microbial processes might be harnessed for … the Office of Science of the U.S. Department of Energy operated under Contract No. DE-AC02-05CH11231. Work carried out …
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