Search

… fantastic diversity of cell types and associated organisms, including fungal and bacterial symbionts, detrimental … single-cell and spatial transcriptomics barcode-based genetics (RB-TnSeq), and computational genomics to better … of plant/environmental responses … Selected Publications … Research Team Alumni … For further details, …

… to unlock their potential for bioenergy, environmental sustainability, and bioproducts. By sequencing and analyzing the genomes of these organisms, the program investigates the … on large-scale sequencing efforts that survey the vast phylogenetic and ecological diversity of fungi and algae, …

… growth, provide critical advantages to the organisms producing them, and are often involved in defense, nutrient … conditions, with only a small portion of the biosynthetic gene clusters (BGCs) being expressed. The program works to … factors and determine their binding sites across multiple genomes. Computational prediction of heterologous …

… bacterial, archaeal and eukaryotic microbes and viruses in environmental sequence data. We use multi-omics … and biogeochemical cycles. Research Team    … A complete publication list available at Google Scholar. Schulz, C … (2022) Giant virus biology and diversity in the era of genome-resolved metagenomics. Nature Reviews Microbiology …

… include exploration of the global diversity of alternative genetic codes (Science 2014), unearthing hundreds of thousands of new viral genomes and their predicted hosts (Nature 2016, Science … Science 344(6186):909-13 … Research Efforts … Selected Publications … For further details, please reach out to the …

Research in the Eloe-Fadrosh group focuses on using genome-resolved metagenomic approaches to identify and … Ladau, J. et al. (2019)  Spatial, Temporal, and Phylogenetic Scales of Microbial Ecology . Trends Microbiol. … Microbiology , 15032. 10.1038/nmicrobiol.2015.32 … Selected Publications … For further details, please reach out to the …

… starts with a User Agreement — before any work can begin, including the submission of samples for sequencing, or … and Appendix. An Appendix identifies the type of work or specific proposal to be covered under the Agreement. The … rights in technical data, project reporting to the DOE, and publication requirements. An official with authority is …

… this identification, metabolomics enables functional genome annotation, improves understanding of the role small … products At JGI, in-depth molecular profiles are generated for metabolites extracted from a variety of … as different types of environments (e.g. soil, lake).  A wide range of metabolites are identified using LC-MS/MS …

… percentile*) DNA Synthesis Constructs <5kb in size Single gene or multiple small genes assembled to less than 5kb in … Fungal Minimal Draft Lower coverage short-read whole genome shotgun sequencing Assembly, annotation ( Mycocosm ) … Plant, Algal, Fungal, and Microbial DAP-seq Used for genome-wide identification of transcription factor binding sites. …

The Micro-Scale Applications group explores the genetic makeup of natural microbial communities using a … technology in order to enhance the quality of single-cell genomes and directly link functional information with … genomes, the JGI now uses laser microdissection to selectively isolate and sequence microbial aggregates after …

… data and serving them to users via the Integrated Microbial Genomes & Microbiomes (IMG/M) system. Research Team    … The … production pipeline, ANI is used to ascertain the species specificity of single cells and genomes extracted from … sequenced at the JGI. IMG/M is also open to scientists worldwide for the annotation, analysis, and distribution of their …

… genomic resources empower students through isolation and genome sequencing of new fungal species.  Students collect fungi, sterilize tissue, isolate genes and more. The metadata then goes into iNaturalist. … and publicly available datasets encompassing a wide array of fungal genomes, along with curated metadata to …