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Secondary Metabolites Program
… Secondary Metabolites Program focuses on the exploration of secondary metabolites across bacteria, fungi, algae and … advantages to the organisms producing them, and are often involved in defense, nutrient acquisition and … their potential applications in the bioeconomy including biofuels, biochemicals and sustainable agriculture. …
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Offerings & Capabilities
… The central mission of the JGI’s Genomic Technologies department is   ensuring … and other data produced at scales amenable to statistical analysis. To meet these needs, the JGI deploys state-of-the-art sequencers and platforms dedicated to synthesis, single-cell …
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Metabolomics
… this identification, metabolomics enables functional genome annotation, improves understanding of the role small molecules play in diverse biological … based methods in combination with advanced computational analysis.   Overview of metabolomics products At JGI, …
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Viral Genomics Group
… group aims at improving our collective understanding of ecological and evolutionary parameters driving virus:host … involves both experimental and computational exploration of uncultivated viral diversity, characterization of molecular mechanisms involved in virus:host interaction …
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Metabolomics Program
… The JGI’s Metabolomics Program works to uncover the roles of small molecules in biological systems, linking them with genomic data to enhance our understanding of genome science, organisms, and ecosystems at the molecular … a combination of experimental workflows and computational analysis, JGI scientists are able to link metabolic activity …
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User Support
… the JGI will move to a new login service, requiring the use of an ORCID account with two-factor authentication enabled … has completed, your Project Manager will initiate analysis with the appropriate JGI analysis team. During this … access your data, share with collaborators, and coordinate publication with JGI scientists. Synthetic DNA constructs …
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Natural Prodcast Episode 20: Brian Bachmann
… in the early 2000s called Ecopia, which was a very early genome mining company, back when DNA sequencing of natural … And at the time, it was really exciting when people would sequence [DNA]. The genome was– well, that hadn’t really … of what’s out there so that we can do more comparative analysis and maybe– I don’t know– start to put some of these …
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Natural Prodcast Episode 4: Nancy Keller
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the … out introns and dealing with, you know, weirdness in the sequence. You know, some clusters are not clustered…   … Then you have to maybe improve some of your bioinformatic analysis. You don’t want to get clusters that are encoding …
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Natural Prodcast Episode 24: Jackie Winter and SMC
… Breaking Bad, I guess. But no, you trained me in how to genome mine, so thank you for that. And you had to put up … have an E. coli strain that we’ve been working on that we sequenced the genome. And it has 17 resistant genes on a … And I think a lot of times, too, when we even look at publications, it’s always positive data, right? No one ever …
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Mining New Frontiers: The Critical Minerals and Materials Joint Call
… The Joint Genome Institute and the Molecular Foundry have launched a … for researchers to request the capabilities and expertise of both national user facilities in one research proposal.  … challenges in the sourcing, recovery, and utilization of critical minerals and materials. The proposal submission …
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Community Science Program
… synthesis, and metabolomics at the JGI for projects of relevance to Department of Energy (DOE)  Mission Areas . Through this program, the DOE aims to advance genome science-based scientific research from a broad range … accepted proposals, sequencing, synthesis, metabolomics and analysis will be performed by the JGI at no cost to the user. …
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Project Management Office
… The JGI Project Management Office carries out a number of activities to facilitate world-class science. PMO works with users, JGI scientists and technical staff to onboard users and guide them … Please review our FAQ in advance of contacting the PMO office.  … start on any approved proposal – including the submission of samples for sequencing, or the submission of sequencing …
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