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And it actually was jumping onto the I ntegrated Microbial Genomes and Metagenomes, the IMG platform that JGI has that … has been fun because then we’ve been able to blow out the scale a little bit for the project. DAN: Do you see broader … up on previous Natural Prodcast episodes  here . Show Notes Publication: Suo Z et al. A Mesorhizobium japonicum quorum …

… in the early 2000s called Ecopia, which was a very early genome mining company, back when DNA sequencing of natural … a postdoc and went to industry to see what they had, what data they had. DAN UDWARY: And they had a lot of data for … tell us what’s active, which peak is active before we even scale up. The reason that we did that was to fit what we …

… and products . A minimum request of 1 Tb of sequence data is required to qualify for BERSS. For DNA synthesis … generally conform to the guidelines for our  CSP Large Scale call .  Process Proposals may be submitted at any … science.  Projects include de novo generation of genome data, assistance in interpreting and/or building on …

I think on COVID that we’re getting ready to submit for publication and have found some interesting hits for that as … it’s not that easy. There are still not that many plant genomes, certainly nowhere close to bacterial kinds of … a question about the complexity of the problem so and the scale. So thinking about 33,000 plants, how many plants …

… begin, and all CSP proposals are subject to JGI policies on Data Release and Publication .   Except for applicants to the CSP New … on our YouTube channel as well as in this episode of our Genome Insider podcast.  You can also contact …

… then be used to submit proposals, sample and project metadata, and to access JGI tools and systems. … Go to the “ … listed on the “info” page for that organism on the Genome Portal . … You can view the status of all public … for individuals associated with your proposal. Find our Publications Policy on our Data Policy & Support page.    … …

UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast– a podcast about natural … of natural product biosynthesis in bacteria ” The ActDES publication came out after we talked. It looks like a great … product biosynthetic enzymes. ” And CORASON, for large-scale comparisons of biosynthetic gene clusters: “ A …

… of the process needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes … GenTegra RNA Preparation Procedure … 1) Complete Sample Metadata form Sample metadata is collected via spreadsheet or … Project Manager (PM) a list of organism names (or for metagenomes, sample names).  Need help naming your organisms? …

… and bioproducts. By sequencing and analyzing the genomes of these organisms, the program investigates the … and biogeochemistry. The program’s focus is on large-scale sequencing efforts that survey the vast phylogenetic … sampling of fungi, laboratory analysis and genomics data exploration. … The Mycocosm web portal provides data …

… overview and major challenges of host prediction methods for uncultivated phages.  Current Opinion in Virology .  49 … al. (2019) Minimum Information about an Uncultivated Virus Genome (MIUViG).  Nature Biotech .  37 , 29–37 Roux S, et … abundant ocean viruses.  Nature . 537:689-93. … Selected Publications … For further information contact the Group …

And we’ve done some work with those and have a couple of publications out there on the chemistry. There’s so much … almost never Actinomycetes. And so when we look at their genomes we don’t get the same kind of information that we … is what those would be. The work that we do at larger scale in order to look at the chemistry a little bit more …

You’re listening to the US. .Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the … in those two fields and the ability to process samples at scale. So, lots of samples. ALISON: Yeah, how many samples … for a company. Personally, that was my first taste of big data if you want, maybe it’s medium data now. But at the …