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Project Management Office
… to onboard users and guide them through the process of working with our facility. This includes help with: preparing a Statement of Work, … DNA Synthesis and Single-Cell Genomics Vivian Ng Fungal Genomics …
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Natural Prodcast Episode 18: A CSP Primer
And I think also the quality that we provide. So for fungal and for a lot of our eukaryotic genomes, all our … proposals that are really multifaceted, that do request a diversity of the different capabilities that we have, that … do the bioinformatics and to synthesize these results into publication? So there’s this really important because we …
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JGI Portals
… and require constant developments to meet the ever-changing demands of our users. … Download plant, algal, fungal and microbial genomes and metagenomes — top-quality … integrated context. IMG/M provides tools for analyzing the functional capability of microbial communities based on …
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Institutional User Agreements
… starts with a User Agreement — before any work can begin, including the submission of samples for sequencing, or … rights in technical data, project reporting to the DOE, and publication requirements. An official with authority is … and delays on the work. The transfer of a proposal from one commercial institution to a new commercial …
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Natural Prodcast Episode 21: Elizabeth Parkinson
… right. Welcome back to Natural Prodcast. I did it. I’m keeping to my schedule. This should be coming out on the first … students, we obviously can't put any antibiotics or antifungals in there. So they get just a smattering. JACKIE: … on DAP-Seq: Enlarging Windows into Understanding Gene Functions Purdue's page on mental health resources. It might …
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How to Submit Sequencing Samples
… the process needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes instructions on … QC Protocol DNA Extraction 101 : tips, kits, and protocols (from PacBio) Guidance for sample collection and storage … sends Project Manager (PM) a list of organism names (or for metagenomes, sample names).  Need help naming your …
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Natural Prodcast Episode 15: Katherine Duncan
… then, chemistry-wise, they’re the stars, right? Chemical diversity, the sheer number of chemicals they produce, their … of those within that cluster, you can begin to infer the function of the other molecules. Dan Udwary: Yeah, it’s– … is a whole bunch of information that maybe never makes its publication. And these are little tips, you know, how to …
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FICUS Overview
The Facilities Integrating Collaborations for User Science (FICUS) … aims to encourage innovative research exploiting a diversity of capabilities. Previously, researchers had to … provides customized analysis, the JGI also participates in publication of results. … All proposals undergo technical …
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Natural Prodcast Episode 11: Marnix Medema
… efforts in paired-omics data sets and seeking to interpret function from BGCs. It’s a long, wide ranging conversation … you to get a bird’s-eye perspective on the biosynthetic diversity element of these genomes. And you see how they’re– … are protecting the plants against pathogens. So usually fungal or oomycete pathogens. In this case they worked on a …
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Natural Prodcast Episode 14: Nigel Mouncey
… it’s really about what are they doing. And so it’s really functional genomics. And there’s a lot of sequencing based … A few examples of those are obviously expanding the diversity of known secondary metabolites and their … help the Society grow. And so I’ve been the chair of the publications committee for the last, what is it now, five …
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Sequencing Technologies
The Sequencing Technologies Group applies cutting edge molecular capabilities and state-of-the-art next-generation sequencing to enable biological discovery by the JGI and external …
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Micro-Scale Applications Group
… the genetic makeup of natural microbial communities using a variety of cutting-edge approaches.  Our group also … the quality of single-cell genomes and directly link functional information with individual cells. Research Team  … measure environmental microbiome activity levels.This functional assay lets us move beyond cataloging the genes of …
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