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JGI Portals
… The JGI’s data stewardship expertise and infrastructure enable a broad community of scientists and … for amplifying the JGI’s impact. Data generated from a single investment will be reused for further … Notices Data Portal files will be inaccessible July 22–July 24 for computing upgrades . We regret any …
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DNA Synthesis Program
… DNA Synthesis Program supports a wide range of projects, from single-gene synthesis to the synthesis of entire chromosomes, … solutions.  The program has been a pioneering effort in functional genomics since 2012, with a focus on addressing … The DNA Synthesis Program plays a central role in advancing functional genomics, focusing on developing genetic systems …
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Natural Prodcast Episode 18: A CSP Primer
… And I think also the quality that we provide. So for fungal and for a lot of our eukaryotic genomes, all our … proposals that are really multifaceted, that do request a diversity of the different capabilities that we have, that … do the bioinformatics and to synthesize these results into publication? So there’s this really important because we …
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Natural Prodcast Episode 22: Alison Narayan
… Hey everyone. Welcome back to Natural Prodcast. This continues the series of interviews we recorded at the Society … sentence. I think that sometimes, we think about enzyme function is we think about the natural function versus can … made it onto our list is because we wanted to have diversity. And so we wanted a profile across that protein …
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Institutional User Agreements
… starts with a User Agreement — before any work can begin, including the submission of samples for sequencing, or … rights in technical data, project reporting to the DOE, and publication requirements. An official with authority is … and delays on the work. The transfer of a proposal from one commercial institution to a new commercial …
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How to Submit Sequencing Samples
… the process needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes instructions on accessing sample-level reports and tracking … 1) Review JGI sample QC requirements and protocols Obtaining DNA and RNA of suitable quantity and quality has been …
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Natural Prodcast Episode 15: Katherine Duncan
… then, chemistry-wise, they’re the stars, right? Chemical diversity, the sheer number of chemicals they produce, their … of those within that cluster, you can begin to infer the function of the other molecules. Dan Udwary: Yeah, it’s– … is a whole bunch of information that maybe never makes its publication. And these are little tips, you know, how to …
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Natural Prodcast Episode 11: Marnix Medema
… efforts in paired-omics data sets and seeking to interpret function from BGCs. It’s a long, wide ranging conversation … you to get a bird’s-eye perspective on the biosynthetic diversity element of these genomes. And you see how they’re– … are protecting the plants against pathogens. So usually fungal or oomycete pathogens. In this case they worked on a …
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Natural Prodcast Episode 21: Elizabeth Parkinson
… right. Welcome back to Natural Prodcast. I did it. I’m keeping to my schedule. This should be coming out on the first … over our interview with Dr Elizabeth (or Betsy) Parkinson from Purdue University. She’s in the Department of Chemistry … students, we obviously can't put any antibiotics or antifungals in there. So they get just a smattering. JACKIE: …
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FICUS Overview
… The Facilities Integrating Collaborations for User Science (FICUS) … aims to encourage innovative research exploiting a diversity of capabilities. Previously, researchers had to … provides customized analysis, the JGI also participates in publication of results. …
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Data Policy
… and released by the US Department of Energy (DOE) Joint Genome Institute (JGI) are subject to the following Data Policy. It … this policy) produced through all user projects accepted FY22 and later through the Community Science Program (CSP), … PIs or co-PIs) who wish to include use-restricted data in publications, or who wish to redistribute data in any way …
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Natural Prodcast Episode 7: Ben Shen
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s … natural products of microbial origin is around 30,000 from fungal, and a 40,000 from bacteria. Okay? And among the … you to, say, go to your grandma’s backyard. To collect the diversity that exists in the 1940s? The answer is no! If …
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