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Natural Prodcast Episode 11: Marnix Medema
… … Dan Udwary: You’re listening to the Department of Energy Joint Genome Institute’s … problem in the field, that there were many papers reporting sequences and pathways– sequence is not right to say. But of … of hooks into IMG’s data. IMG being Integrated Microbial Genomics at JGI, a large data set of bacterial genomes. And …
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Project Management Office
… to onboard users and guide them through the process of working with our facility. This includes help with: preparing a Statement of Work, … PMO Lead, Metabolomics Program Kerrie Barry Plant and Algal Genomics Natasha Brown Supply Chain Manager Tijana Glavina …
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Single Cell Research Group
Research in the Woyke laboratory focuses on the utility of … focused on the application of  function-driven single-cell genomics . Here, single cells are characterized and selected … … Research Interests … Former Lab Members … Selected Publications … For further details, please reach out to the …
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Frequently Asked Questions: Proposal Submission
… submission process. You can review successful letters of intent and submissions at the bottom of the page.  … Review … proposals are subject to JGI policies on Data Release and Publication .   Except for applicants to the CSP New … are encouraged to contact the JGI concerning other genomic resource needs. … Scientific merit is the major …
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User Support
… collaborate with users to develop project requirements, define the scope of work and outline roles and responsibilities resulting in a formal … access your data, share with collaborators, and coordinate publication with JGI scientists. Synthetic DNA constructs …
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DOE Metrics
FY 2025 DOE Metrics Sequencing Quarter Total Bases (Trillions) Operating Hours Goal Actual Total* Actual % of Goal Goal (hours)** … new computational developments for improving microbial, metagenomic, or plant genome assemblies. [Download PDF] Q2 – …
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Natural Prodcast Episode 14: Nigel Mouncey
… for Episode 14 of Natural Prodcast . There’s been a lot going on, so I took a little break, but I’m hoping that from … about what are they doing. And so it’s really functional genomics. And there’s a lot of sequencing based approaches, … help the Society grow. And so I’ve been the chair of the publications committee for the last, what is it now, five …
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User Support Analysis Group
We perform analysis for diverse experiment types, with main focus areas being genome variation, transcriptomics and epigenomics. Our work varies in scope from the development of …
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Natural Prodcast Episode 7: Ben Shen
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s … on DNA sequencing and synthetic biology. But also the metagenomics and gut microbiome, as I think that it’s like a … And in DNA is all that the same molecule, just different sequences BEN: The other thing I think about JGI is, really, …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… planet’s microbial diversity is immense, yet much of it remains unknown. For more than a decade, researchers around the … knowledge. In a study published November 11, 2022, in Cell Genomics , the team focused on Actinobacteria ( … resource, but also yielding and supporting many high-impact publications ,” emphasized Markus Göker, who managed the …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
Team develops a computational pipeline to sift and characterize RNA virus sequences.  A zoo … Finding the RNA virus snowflakes in the snowstorm of genomic data involved developing special computational … Tel Aviv and NCBI teams, who were already working on mining prokaryotic viruses together, learned from JGI’s Nikos …
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Operating Expenses
FY2023 Spending Profile The JGI is funded primarily by the DOE Office of … Biological and Environmental Research (BER), a program within the DOE Office of Science. …
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