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Plant Microbial Interactions Group
… are complex organisms that harbor a fantastic diversity of cell types and associated organisms, including fungal and bacterial symbionts, detrimental microbial pathogens, and associated viruses that all contribute to a dynamic ecosystem. We are … fungi, viruses. Resident viruses can be found in a myriad of bacterial strains, whereby they can modulate host …
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Secondary Metabolites Program
… Secondary Metabolites Program focuses on the exploration of secondary metabolites across bacteria, fungi, algae and … growth, provide critical advantages to the organisms producing them, and are often involved in defense, nutrient acquisition and … Program targets the vast and underexplored reservoir of secondary metabolites produced by bacteria, fungi, algae …
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Frequently Asked Questions: Project Management
… Kerrie Barry or Vivian Ng Prokaryotic projects: Tijana Glavina del Rio , Danielle Graham , or Miranda Harmon-Smith DNA … You can visit the Products & Offerings section of our website for more details, including a … The majority of JGI projects come from the user community. Find out about …
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FICUS-NERSC/KBASE
… The mission of the Joint Genome Institute is to serve the scientific community as … of Science through high performance computing (HPC) and data analysis.  The DOE Systems Biology Knowledgebase ( … as needed), and the work plan is written into a Statement of Work document. …
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Natural Prodcast Episode 18: A CSP Primer
… while, but Natural Prodcast is back again for another round of episodes. If you stick around for the next few months, … do the bioinformatics and to synthesize these results into publication? So there’s this really important because we … MENAKA WILHELM: Yeah. That makes sense. And then, if we fast forward to the end of a successful project, can you …
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Natural Prodcast Episode 20: Brian Bachmann
… DAN UDWARY: Hey everyone and welcome back to a new session of Natural Prodcast. I’ve got two things I wanted to tell … and look for cytotoxicity, do you think it would be faster than that? DAN UDWARY: Yeah, yeah, yeah. Yeah, I … to this? Or you’re just really like– molecular biology on plasmids and stuff to express things, or? What’s the– BRIAN …
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Natural Prodcast Episode 11: Marnix Medema
… Dan Udwary: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … to my submission, they were saying that natural product identification– biosynthetic gene cluster identification was … really streamlined this whole process and made it so much faster than it was before. And then, well, this also became …
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Partnerships: Myco-Ed
… Undergraduate Research Experience (CURE) that consists of coordinated hands-on experiments across fungal biology teaching … resources empower students through isolation and genome sequencing of new fungal species.  Students collect fungi, … Beyond providing a scalable solution for production of high-quality fungal reference genomes, this program is an …
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An Automated Tool for Assessing Virus Data Quality
… (metagenomes). However, the quality and completeness of metagenome-assembled virus sequences vary widely. In a … fragmented data, which limits the ability of researchers to accurately perform functional assessment, host prediction, … non-viral genes. Up to this point, there has been a lack of fast and accurate tools for researchers to assess the …
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Mining New Frontiers: The Critical Minerals and Materials Joint Call
… The Joint Genome Institute and the Molecular Foundry have launched … for researchers to request the capabilities and expertise of both national user facilities in one research proposal.  … challenges in the sourcing, recovery, and utilization of critical minerals and materials. The proposal submission …
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Micro-Scale Applications Group
… Micro-Scale Applications group explores the genetic makeup of natural microbial communities using a variety of cutting-edge approaches.  Our group also … pipeline that utilizes internal analytical standards to accurately measure environmental microbiome activity …
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Natural Prodcast Episode 7: Ben Shen
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s … part of that. I’m also going to mention that Ben talks fast – it’s part of his energy – and he has an accent, and, … This is our conversation with Professor Ben Shen, from The Scripps Research Institute (TSRI) …
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