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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… have leveraged data from the 1000 Fungal Genomes project to form new connections between fungal guilds, genes … in cooperation to support a forest, and species vary across Earth’s ecosystems.  Recently, in work  published in  New … tree of life. Martin is one of the project leads. After starting with about 200 fungal genomes, in just a few years, …
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Natural Prodcast Episode 11: Marnix Medema
… the professor was actually quite enthusiastic about the project and he arranged funding to do it nonetheless from his own group’s funds. So I could start that project, and I was about to start that project when another … and integrate is one thing, but how do we actually go about starting to do that? We talked to Roger Linington about this …
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Plant Program
… With collaborative user projects, the JGI’s Plant Program delves into the natural … capture atmospheric carbon, helping to regulate Earth's carbon balance, to exploring the genetic basis of … gene function research. The  Open Green Genomes (OGG) project seeks to develop comparative high quality genomes …
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Natural Prodcast Episode 7: Ben Shen
… to the Primer episodes, then you heard me talk about JGI’s Earth Secondary Metabolome initiative, and our collaboration … benefits. DAN: Now, you and I are working together on a project at the JGI to try to find new enediyne clusters and … produce them. Do you want to talk a little bit about that project and how that got started? BEN: Yeah, so I want to …
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Natural Prodcast Episode 14: Nigel Mouncey
… And a little after that acquisition, I moved to another project. This time on vitamin C with a Gluconibacter .  And … slides that float around here, there is a term called “Earth’s Secondary Metabolome.” Do you want to explain to … help the Society grow. And so I’ve been the chair of the publications committee for the last, what is it now, five …
Learn more
Programs & Platform Leads
… achieving a predictive understanding of complex biological, earth, and environmental systems for energy and …
Learn more
FICUS-NERSC/KBASE
… to DOE for final approval.  Following DOE approval, project managers negotiate project specifics with PIs (including JGI scientists as … For sequencing projects, once work is under way, raw sequence data is … more customized analysis, the JGI also participates in publication of results. …
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Natural Prodcast Episode 9: Roger Linington
… take problems. And they would take a sort of foundational starting point. And they would work linearly through all of … and doing medicinal chemistry, doing development of projects on a project-by-project basis. And the more time has gone on, the …
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Natural Prodcast Episode 17: Cassandra Quave
… find me. And really it was my third grade science fair project where I first looked into a microscope and just fell … or terrestrial biodiversity hotspots that we have on Earth, most of those occur in nations that have very poor … I think on COVID that we’re getting ready to submit for publication and have found some interesting hits for that as …
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JGI@25: The Human Genome Project, or the JGI’s Origin Story
… energy and environmental challenges.   The Human Genome Project began in 1990 when the U.S. Department of Energy … Hear her memories of what it was like sequencing around the clock and see some of the physical memorabilia that she’s … with the HudsonAlpha Institute for Biotechnology.   Publications Grimwood, J., Gordon, L., Olsen, A. et al. The …
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Natural Prodcast Episode 22: Alison Narayan
… enzymology. So, we talked about her JGI DNA synthesis project to explore the chemical capabilities of flavin … have a very short half life. JACKIE WINTER: So with your [project] with JGI, how many flavin monooxygenases are you … JGI on, and those are ancestral protein sequences. And so starting from some of the enzymes that we had the most data …
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JGI Earth Month: Kjiersten Fagnan Reflects on Shelter-in-Place Effects
… In   April 2020, we mark both the 50th celebration of Earth Day on April 22, and DNA Day on April 25.  On March 17, 2020, a shelter-in-place order for all residents took effect …
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