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Natural Prodcast Episode 13: Francisco Barona Goméz
… to approach it is more related to what JGI does, which is sequence genomes. And we just published last year in the … that people are using in the clinics were kind of kidnapped from nature without paying attention to the … of natural product biosynthesis in bacteria ” The ActDES publication came out after we talked. It looks like a great …
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Natural Prodcast Episode 14: Nigel Mouncey
… our work in sequencing and genome mining with using DNA synthesis to express clusters metabolomics to be able to … to some people more about down the road. Email Nigel! He’ll sequence whatever you want!  [LAUGHTER]  NIGEL MOUNCEY: We … help the Society grow. And so I’ve been the chair of the publications committee for the last, what is it now, five …
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Metabolomics
… at the JGI by identifying the actual molecules present in an environment that influence system behavior.  Through this … functional genome annotation, improves understanding of the role small molecules play in diverse biological … based methods in combination with advanced computational analysis.   Overview of metabolomics products At JGI, …
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IMG Group
The IMG group owns and maintains integral components of JGI’s production workflow, and is responsible for the annotation and analysis of (meta)genomic, (meta)transcriptomic, and … distribution of microbial genome and microbiome datasets sequenced at the JGI. IMG/M is also open to scientists …
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Offerings & Capabilities
The central mission of the JGI’s Genomic Technologies department is   ensuring … through end-to-end automation, and further advancing sequence applications, single cell genomics, DNA synthesis, and metabolomics.   … Deputy of Genomic …
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Natural Prodcast Episode 20: Brian Bachmann
… which was a very early genome mining company, back when DNA sequencing of natural product pathways was hard and … And at the time, it was really exciting when people would sequence [DNA]. The genome was– well, that hadn’t really … of what’s out there so that we can do more comparative analysis and maybe– I don’t know– start to put some of these …
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DOE Metrics
… (Trillions) Operating Hours Goal Actual Total* Actual % of Goal Goal (hours)** Actual Total Actual % Goal FY 2025 … = 91 days; Actual Operation = 24 days due to significant sequencer downtime related to the shelter-in-place. ††† … 8734 2005 28 33.63 8400 8760 * Reflects actual data due to analysis beyond fiscal year-end close. …
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Frequently Asked Questions: Proposal Submission
… proposals are subject to JGI policies on Data Release and Publication .   Except for applicants to the CSP New … for advice!      … The deliverables can range from raw sequence data to well-annotated assembled genomes to synthesized DNA constructs to metabolomics data, depending on the …
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Natural Prodcast Episode 18: A CSP Primer
… at JGI start with sequencing, but where else did those sequences go? Like, what are the other scientific tools we … in addition to sequencing, we offer metabolomics and also DNA synthesis. And we consider these capabilities a little … do the bioinformatics and to synthesize these results into publication? So there’s this really important because we …
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Partnerships: Myco-Ed
… the Arizona Genomics Institute where high molecular weight DNA is extracted from samples, which is then sent to the JGI … … The Mycocosm portal supports the annotation, comparative analysis, and distribution of fungal genome datasets. It includes JGI-sequenced and publicly available datasets encompassing a …
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Natural Prodcast Episode 7: Ben Shen
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … because – mainly it’s due to the emerging technology on DNA sequencing and synthetic biology. But also the … develop enabling technologies. ie how to translate the ATGC sequence into discrete small molecules. So, Dan, I’m very …
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CSP Functional Genomics
Genomics call is to enable users to perform state-of-the-art functional genomics research and to help them … function.  The emphasis is on projects leveraging JGI’s DNA synthesis and ‘omics capabilities to enhance … accepted proposals, sequencing, synthesis, metabolomics and analysis will be paid for by the Department of Energy’s …
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